Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0099.Seq
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          87   9e-18
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   6.1  
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               27   6.1  
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05)                    27   8.0  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 86.6 bits (205), Expect = 9e-18
 Identities = 38/62 (61%), Positives = 51/62 (82%)
 Frame = +1

Query: 292 TLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 471
           TLIEA +DVKTTDGY+LR+FCIG T +     +KT YA+HTQ++AIRKKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 472 SE 477
           ++
Sbjct: 62  ND 63


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -3

Query: 186 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 7
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 125  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 214
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 929

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 376 SPYWXNQCRRHVERIHRLSSHQCWL 302
           S ++ N  R    R+H+  SH CW+
Sbjct: 243 SSWYNNNFRARYGRLHQKGSHTCWI 267


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 314 SMLASMRVCHFLTIHLSLSV*GP-XRXSCXAHYVLAHI 204
           S+++S  +CH + +HLS          SC  H V+ H+
Sbjct: 98  SVISSSCICHIVIVHLSYRHRASVISSSCICHIVIVHL 135



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 314 SMLASMRVCHFLTIHLSLSV*GP-XRXSCXAHYVLAHI 204
           S+++S  +CH + +HLS          SC  H V+ H+
Sbjct: 120 SVISSSCICHIVIVHLSYRHRASVISSSCICHIVIVHL 157


>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 228 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIF 94
           S LR   Y AI + L  D   +       ++T    P+NP++A+F
Sbjct: 331 SVLRAAMYGAIAVLLYPDPEITSKLGTRPQDTFPNTPWNPADAVF 375


>SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05)
          Length = 592

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 178 RPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDI-VPIFASE 2
           RP  ++V    +    ++ S  S  SN   +      G+ +P+A  R +LDI VP+ A++
Sbjct: 512 RPVTITVIDMATNPYKDDKSASSVESNVMEIDLASDSGSRIPVAGLREALDIRVPVNAAQ 571


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,685,940
Number of Sequences: 59808
Number of extensions: 282442
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)