Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0099.Seq
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   125   2e-29
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical p...    27   7.0  
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    27   7.0  
Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  125 bits (301), Expect = 2e-29
 Identities = 59/84 (70%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
           F+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL    ++E  F
Sbjct: 23  FSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSEADF 79

Query: 182 RKFRLIAEYVQGRNVLCNXHGMDL 253
           RKF+LIAE VQG+NVL N H M +
Sbjct: 80  RKFKLIAEDVQGKNVLTNFHAMSM 103



 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 37/73 (50%), Positives = 47/73 (64%)
 Frame = +1

Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKK 438
           DKL  +VKKW TLIEAN  VKTTDGY LRVF I  T K     +KT Y + +++R IR +
Sbjct: 106 DKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSE 165

Query: 439 MCEIITRDVTNSE 477
           M   I ++VT  +
Sbjct: 166 MIGCIEKEVTGCD 178


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 113 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 223
           L+G  + +S+ D +A TD E S +  R IAE+++ R+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


>Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
 Frame = -3

Query: 441 HFLSDCSDLSVLGVARLALAQGVLIGXTNAEDT*NVSIGCLHINVGFDESLPFFNHPP-- 268
           H+L+  S  + +  AR  L +G  +   + +    +   C H NV   + L  F   P  
Sbjct: 33  HYLAASSSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPMS 92

Query: 267 -ELIGLRSXPXKLXSTLRPC-TYSAINLNLRKDLSASVSACRSARET 133
            + +G  +      +TLR    Y   +   R        AC S  ET
Sbjct: 93  ADKLGRTAYSIAKGNTLRFLRRYKKSSNRQRLGFFRRFFACHSRNET 139


>Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
 Frame = -3

Query: 441 HFLSDCSDLSVLGVARLALAQGVLIGXTNAEDT*NVSIGCLHINVGFDESLPFFNHPP-- 268
           H+L+  S  + +  AR  L +G  +   + +    +   C H NV   + L  F   P  
Sbjct: 33  HYLAASSSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPMS 92

Query: 267 -ELIGLRSXPXKLXSTLRPC-TYSAINLNLRKDLSASVSACRSARET 133
            + +G  +      +TLR    Y   +   R        AC S  ET
Sbjct: 93  ADKLGRTAYSIAKGNTLRFLRRYKKSSNRQRLGFFRRFFACHSRNET 139


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 397 TSCVGSRSPYWXN--QCRRHVERIHRLSSH 314
           TS   S SPY      C R + R+HRLS H
Sbjct: 95  TSSCYSSSPYTHEVQSCSRDIPRLHRLSVH 124


>Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical
           protein F57B1.7 protein.
          Length = 235

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 228 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIFVP 88
           + L    Y +IN + +  LS+  S+   A   S ++PF PS  +F+P
Sbjct: 37  NALNSLLYGSINTSPQPLLSSPTSS--DASSCSPSMPFTPSIPMFMP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,664,398
Number of Sequences: 27780
Number of extensions: 205838
Number of successful extensions: 578
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)