Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0099.Seq
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 28  QGSVYVQQEASRHH--ACQPYPGNENCFG 108
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122



 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 331 HRLSSHQCWLR*ES 290
           H LS H+C++R E+
Sbjct: 554 HNLSLHKCFMRVEN 567


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 192 LNLRKDLSASVSACRSARE 136
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,524
Number of Sequences: 438
Number of extensions: 2528
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)