Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0098.Seq
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu... 143 2e-33
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul... 126 4e-28
UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4... 117 2e-25
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu... 92 1e-17
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze... 90 4e-17
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa... 85 2e-15
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ... 75 1e-12
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce... 75 2e-12
UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN full... 56 5e-07
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;... 54 2e-06
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ... 51 2e-05
UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondr... 48 2e-04
UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=... 46 7e-04
UniRef50_Q1PPX2 Cluster: Em1-tg19B; n=1; Euplotes aediculatus|Re... 42 0.011
UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2; Bilateria|... 42 0.015
UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondria... 42 0.015
UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S riboso... 40 0.044
UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8; Euteleostomi|... 39 0.10
UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6; Sacchar... 37 0.41
UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.96
UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondria... 35 1.3
UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, wh... 33 6.7
UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellul... 33 6.7
UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1; ... 32 8.9
UniRef50_A4XF13 Cluster: Transcriptional regulator, LysR family;... 32 8.9
>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
(Human)
Length = 143
Score = 143 bits (347), Expect = 2e-33
Identities = 66/79 (83%), Positives = 73/79 (92%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKCVRVQLIKNGKK
Sbjct: 62 PNSAIRKCVRVQLIKNGKK 80
Score = 116 bits (280), Expect = 3e-25
Identities = 55/58 (94%), Positives = 55/58 (94%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 145
Score = 126 bits (304), Expect = 4e-28
Identities = 56/79 (70%), Positives = 68/79 (86%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GKPRG+ +ARK HRR RWA+ +KK +GT +K++PFGG+SHAKGIVLEK+G+E+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKCVRVQLIKNGKK
Sbjct: 64 PNSAIRKCVRVQLIKNGKK 82
Score = 103 bits (248), Expect = 2e-21
Identities = 47/58 (81%), Positives = 53/58 (91%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN ++ENDEVL+AGFGRKG A GDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 88 PNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
>UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4;
Oryza sativa|Rep: Putative 40s ribosomal protein S23 -
Oryza sativa (Rice)
Length = 301
Score = 117 bits (282), Expect = 2e-25
Identities = 53/78 (67%), Positives = 61/78 (78%)
Frame = +1
Query: 4 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 183
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 184 NSAIRKCVRVQLIKNGKK 237
NSAI KC RVQL+KNGKK
Sbjct: 133 NSAICKCARVQLVKNGKK 150
>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
organisms|Rep: 30S ribosomal protein S12P - Uncultured
methanogenic archaeon RC-I
Length = 142
Score = 91.9 bits (218), Expect = 1e-17
Identities = 42/70 (60%), Positives = 55/70 (78%)
Frame = +1
Query: 28 RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 207
RK V+ R+ RW+D+++ + + KA+P GA AKGIVLEKVGVEAKQPNSAIRKC+
Sbjct: 9 RKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCI 68
Query: 208 RVQLIKNGKK 237
R+QLIKNG++
Sbjct: 69 RIQLIKNGRQ 78
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFG-RKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 419
P DG +N I+E+DEV + G G R G + GDIPGVRF+V KV +VSL + K+++P
Sbjct: 84 PGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140
>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
mays|Rep: Putative 40S ribosomal protein - Zea mays
(Maize)
Length = 309
Score = 89.8 bits (213), Expect = 4e-17
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = +3
Query: 288 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
DEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 224 DEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 269
>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
aerophilum
Length = 147
Score = 84.6 bits (200), Expect = 2e-15
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +1
Query: 7 PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 186
P G+ K R++ RW D +K+ +G K +P GA A+GIVLEKVGVEA++PN
Sbjct: 7 PYGLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPN 66
Query: 187 SAIRKCVRVQLIKNGK 234
+A+RKCVRVQL+KNGK
Sbjct: 67 AAVRKCVRVQLVKNGK 82
Score = 67.7 bits (158), Expect = 2e-10
Identities = 31/57 (54%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGR-KGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 419
P DG LN+I E+DEV++ G +G ++GDIPGVRFKV+KV VSL A+++ KK++P
Sbjct: 89 PLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 102
Score = 74.9 bits (176), Expect = 1e-12
Identities = 37/61 (60%), Positives = 42/61 (68%)
Frame = -1
Query: 433 YTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 254
Y YDLG SFFS +A ++T T TTL TPG+SP A PL P PA TSSFSS F+QPS
Sbjct: 3 YIYDLGFSFFSFHKANKETPETLTTLNLTPGISPLALPLLPKPANKTSSFSSTKFKQPSF 62
Query: 253 G 251
G
Sbjct: 63 G 63
Score = 46.0 bits (104), Expect = 7e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -3
Query: 236 FFPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 135
F PFL++ T TH +AE GCL S P FS+T+P A
Sbjct: 69 FLPFLINWTSTHFSIAEFGCLDSIPIFSKTIPLA 102
>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
cellular organisms|Rep: Protein splicing (Intein) site -
Caldivirga maquilingensis IC-167
Length = 661
Score = 74.5 bits (175), Expect = 2e-12
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = +1
Query: 7 PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 186
P G+ ARK R++ RW+D ++KK +G K +P GA A+GIVLEKVGVEA++PN
Sbjct: 7 PLGLYAARKLRRKRQKFRWSDIQYKKRALGFIKKYDPLEGAPMARGIVLEKVGVEARKPN 66
Query: 187 SAIRKCVRVQLIKN 228
+A+RKCV + N
Sbjct: 67 AAVRKCVTPDTLIN 80
Score = 60.5 bits (140), Expect = 3e-08
Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGR-KGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 419
P DG LN I E+DEV++ G +G A GD+PGVRFKV KV VSL A+ KK++P
Sbjct: 603 PWDGGLNLINEHDEVIIERIGGPEGRAYGDLPGVRFKVTKVNGVSLKAILLGKKQKP 659
>UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence; n=8;
Euarchontoglires|Rep: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 154
Score = 56.4 bits (130), Expect = 5e-07
Identities = 30/71 (42%), Positives = 39/71 (54%)
Frame = -2
Query: 255 GDECGHFLSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLE 76
G E L VLNEL+ DA DGR+ L F + ++LC+R T +R+ L VGFL
Sbjct: 25 GHERCDLLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLV 84
Query: 75 FFVRPSLFTTV 43
FV P L +V
Sbjct: 85 LFVMPLLVPSV 95
>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 143
Score = 54.4 bits (125), Expect = 2e-06
Identities = 29/71 (40%), Positives = 38/71 (53%)
Frame = -2
Query: 255 GDECGHFLSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLE 76
G E L VLNEL+ DA DGR+ L F + ++LC+R +R+ L VGFL
Sbjct: 56 GHERCDLLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGAPKRIGLQGCAQVGFLV 115
Query: 75 FFVRPSLFTTV 43
FV P L +V
Sbjct: 116 LFVMPLLVPSV 126
Score = 38.3 bits (85), Expect = 0.14
Identities = 14/31 (45%), Positives = 26/31 (83%)
Frame = -3
Query: 398 VESEERHVGYFYHLKTNSGNVTDGVTFTTES 306
++S++R++GYF HLK +S ++T +TF+T+S
Sbjct: 9 LQSQQRNIGYFNHLKEDSRDITYSMTFSTKS 39
>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 128
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 288 DEVLVAGFGRKGHAVGDIPGVRFKVVK 368
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein S12; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to mitochondrial ribosomal protein
S12 - Nasonia vitripennis
Length = 173
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +1
Query: 112 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 237
NPF GA AKG+VL+ + + K+PNSA RKCV V+L NGK+
Sbjct: 83 NPFNGAPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 123
>UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=3;
Coelomata|Rep: Mitochondrial ribosomal protein S12 -
Bombyx mori (Silk moth)
Length = 111
Score = 46.0 bits (104), Expect = 7e-04
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +1
Query: 88 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 237
H+ + NP G AKG+VL+ V + K+PNSA RKCV V+L NGK+
Sbjct: 13 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKE 61
>UniRef50_Q1PPX2 Cluster: Em1-tg19B; n=1; Euplotes aediculatus|Rep:
Em1-tg19B - Euplotes aediculatus
Length = 139
Score = 41.9 bits (94), Expect = 0.011
Identities = 28/70 (40%), Positives = 39/70 (55%)
Frame = -2
Query: 252 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEF 73
+E HFL VL EL++DA ++G V LL F + DDA C +E + L R H F
Sbjct: 70 NESSHFLVVLFELHSDALSNGCVWLLGFDCDLFYDDACCAWSNSEWLILGSR-HC-FNVS 127
Query: 72 FVRPSLFTTV 43
+ PSL ++V
Sbjct: 128 CIVPSLLSSV 137
>UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2;
Bilateria|Rep: EG:BACH59J11.1 protein - Drosophila
melanogaster (Fruit fly)
Length = 154
Score = 41.5 bits (93), Expect = 0.015
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +1
Query: 88 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 237
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L GK+
Sbjct: 56 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKE 104
>UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondrial
precursor; n=7; Coelomata|Rep: 40S ribosomal protein
S12, mitochondrial precursor - Drosophila melanogaster
(Fruit fly)
Length = 140
Score = 41.5 bits (93), Expect = 0.015
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +1
Query: 88 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 237
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L GK+
Sbjct: 42 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKE 90
>UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S ribosomal
protein S12, mitochondrial precursor (MT-RPS12)
(Technical knockout locus protein); n=2; Coelomata|Rep:
PREDICTED: similar to 40S ribosomal protein S12,
mitochondrial precursor (MT-RPS12) (Technical knockout
locus protein) - Tribolium castaneum
Length = 156
Score = 39.9 bits (89), Expect = 0.044
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 88 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 237
H+ + P G KG+VL+ + + K+PNSA RKCV V+L NGK+
Sbjct: 60 HIKERKPRRPLDGKPFMKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 108
>UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8;
Euteleostomi|Rep: Mrps12-prov protein - Xenopus laevis
(African clawed frog)
Length = 150
Score = 38.7 bits (86), Expect = 0.10
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +1
Query: 115 PFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 237
P G KG+VL+ + + K+PNSA RKC RV+L NGK+
Sbjct: 62 PTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL-SNGKE 101
>UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6;
Saccharomycetales|Rep: 30S ribosomal protein S12 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 183
Score = 36.7 bits (81), Expect = 0.41
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +1
Query: 139 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 234
+G++L + ++ K+PNSA+RKC RV+L NGK
Sbjct: 90 RGVILRIMILKPKKPNSALRKCARVRL-SNGK 120
>UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 157
Score = 35.5 bits (78), Expect = 0.96
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +1
Query: 124 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondrial
precursor; n=13; Deuterostomia|Rep: 28S ribosomal
protein S12, mitochondrial precursor - Homo sapiens
(Human)
Length = 138
Score = 35.1 bits (77), Expect = 1.3
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 106 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_29,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 107
Score = 32.7 bits (71), Expect = 6.7
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 31 KHVNHRREQ--RWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 204
K H+R Q W K+F K + T+ + G H KG+++ K G + N + +
Sbjct: 26 KITKHKRVQGRAWRRKQFNKRKVQTQLQKTLVGQQIHLKGVLVHKKGPNWHKGNKQLLEK 85
Query: 205 VRVQLIK 225
+++L++
Sbjct: 86 EKIELVQ 92
>UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellular
organisms|Rep: 30S ribosomal protein S12 - Aquifex
aeolicus
Length = 128
Score = 32.7 bits (71), Expect = 6.7
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 100 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNG 231
K KA G +G+ + V K+PNSA+RK RV+L NG
Sbjct: 18 KSKAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL-SNG 60
>UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1;
Mesorhizobium sp. BNC1|Rep: Putative uncharacterized
protein - Mesorhizobium sp. (strain BNC1)
Length = 338
Score = 32.3 bits (70), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 230 PFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 135
P + R+H ++ E+ C + P +S T+PFA
Sbjct: 240 PTAFNSARSHNKILEIACFGAAPVYSSTVPFA 271
>UniRef50_A4XF13 Cluster: Transcriptional regulator, LysR family;
n=1; Novosphingobium aromaticivorans DSM 12444|Rep:
Transcriptional regulator, LysR family - Novosphingobium
aromaticivorans (strain DSM 12444)
Length = 315
Score = 32.3 bits (70), Expect = 8.9
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 28 RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
R+H + W EF A G W ANP G A+ A G+V + KQ
Sbjct: 193 RRHAGALQSLGWG-YEFDAALPGGPWSANPAGEAAQAAGLVTFNAWPQLKQ 242
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,725,109
Number of Sequences: 1657284
Number of extensions: 11217505
Number of successful extensions: 26931
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 26122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26925
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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