Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0098.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 132 3e-32
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 132 3e-32
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 30 0.22
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.8
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 6.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 6.3
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 6.3
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 132 bits (320), Expect = 3e-32
Identities = 59/79 (74%), Positives = 69/79 (87%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKCVRVQLIKNGKK
Sbjct: 62 PNSAIRKCVRVQLIKNGKK 80
Score = 96.7 bits (230), Expect = 2e-21
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 86 PHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 132 bits (320), Expect = 3e-32
Identities = 59/79 (74%), Positives = 69/79 (87%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKCVRVQLIKNGKK
Sbjct: 62 PNSAIRKCVRVQLIKNGKK 80
Score = 96.7 bits (230), Expect = 2e-21
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 86 PHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.3 bits (65), Expect = 0.22
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 124 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
G+ +G+ V+ K+PNSA+RK RV+L
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -2
Query: 342 ECHRRRDLYDRIPP-LVLRRFLRCGLGNRHGDECGHFLSVLNELYTDAFADGRVGLLSFY 166
EC + +Y IPP L + R+ + H D GH L + E +A + G SF+
Sbjct: 155 ECSLQGFMY--IPPTLFIDRYELSNIAEMHADNLGHVLGIWGETDLEAPSYKLNGTGSFF 212
Query: 165 -TNFLEDDAL 139
+ DD L
Sbjct: 213 WFDIYTDDGL 222
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 364 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 254
+++K P + P P P+ AT+TSS +++ PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 61 WADKEFKKAHMGTKWKANPFGGASHAKGIV 150
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 67 PPIAVHDGGSRAYAP 23
PP AV GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 422 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 300
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,575
Number of Sequences: 5004
Number of extensions: 44009
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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