Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0098.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 127 8e-30
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 127 8e-30
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 117 6e-27
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 29 3.7
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.9
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 127 bits (306), Expect = 8e-30
Identities = 56/79 (70%), Positives = 65/79 (82%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKC RVQL+KNGKK
Sbjct: 61 PNSAIRKCARVQLVKNGKK 79
Score = 112 bits (270), Expect = 2e-25
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 85 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 127 bits (306), Expect = 8e-30
Identities = 56/79 (70%), Positives = 65/79 (82%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKC RVQL+KNGKK
Sbjct: 61 PNSAIRKCARVQLVKNGKK 79
Score = 127 bits (306), Expect = 8e-30
Identities = 56/79 (70%), Positives = 65/79 (82%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 172 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 230
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKC RVQL+KNGKK
Sbjct: 231 PNSAIRKCARVQLVKNGKK 249
Score = 112 bits (270), Expect = 2e-25
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 255 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 109 bits (261), Expect = 2e-24
Identities = 49/56 (87%), Positives = 53/56 (94%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 419
P DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 85 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 117 bits (282), Expect = 6e-27
Identities = 53/78 (67%), Positives = 61/78 (78%)
Frame = +1
Query: 4 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 183
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 184 NSAIRKCVRVQLIKNGKK 237
NSAI KC RVQL+KNGKK
Sbjct: 133 NSAICKCARVQLVKNGKK 150
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAG 308
P DGCLN I+EN+ V G
Sbjct: 156 PNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 288 DEVLVAGFGRKGHAVGDIPGVRFKVVK 368
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Frame = -2
Query: 456 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRIPPLVLR 289
T GH+++ P+ L LCR E + ++ P E E H+ DL I +
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNIAQITAC 197
Query: 288 RFLR-CGLGNRHGDECGHFLSVLN 220
C +G G + +LN
Sbjct: 198 TIQSLCKIGTHAASSGGSQVILLN 221
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 57 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 155
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,230
Number of Sequences: 37544
Number of extensions: 338783
Number of successful extensions: 942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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