Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0098.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 144 6e-35
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 116 1e-26
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1) 29 2.9
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 5.0
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20) 27 8.7
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 27 8.7
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6) 27 8.7
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 27 8.7
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3) 27 8.7
SB_3221| Best HMM Match : rve (HMM E-Value=3) 27 8.7
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 144 bits (348), Expect = 6e-35
Identities = 66/78 (84%), Positives = 72/78 (92%)
Frame = +1
Query: 4 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 183
KPRG+RTARK +HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2 KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61
Query: 184 NSAIRKCVRVQLIKNGKK 237
NSAIRKCVRVQLIKNGKK
Sbjct: 62 NSAIRKCVRVQLIKNGKK 79
Score = 69.3 bits (162), Expect = 2e-12
Identities = 27/33 (81%), Positives = 32/33 (96%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 350
P DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 85 PNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 116 bits (279), Expect = 1e-26
Identities = 52/58 (89%), Positives = 57/58 (98%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 86 PNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1
Query: 154 EKVGVEAKQPNSAIRKCVRVQLIKNGKK 237
++ GVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 84 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 182
S HG MEG P W +S G P+ S C S +A
Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117
>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
Length = 488
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Frame = -3
Query: 221 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 57
M C + E+ C PT R T DA P GL H M L+ + R
Sbjct: 58 MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116
Query: 56 CSRRWFTCLRAVRIPRGL 3
C W T L+ +P GL
Sbjct: 117 CPANWTTQLQRDALPTGL 134
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -3
Query: 152 RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 57
R +PF+ APPKG F VP+W +F N S+ HR
Sbjct: 902 RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
Length = 255
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 44 TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 136
T V R N++KP +R+GR+T+S+ +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133
>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
Length = 302
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 139 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 234
KG+ ++ + K+PNSA RKC ++L NGK
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGK 260
>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
Length = 294
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 252 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 148
D+ F NE AD R GL+ NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148
>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 256
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 76 ILCPPIAVHDGGSRAYAPFV 17
++ PP + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234
>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
Length = 471
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 252 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 148
D+ F NE AD R GL+ NF+ED
Sbjct: 163 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197
>SB_3221| Best HMM Match : rve (HMM E-Value=3)
Length = 324
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 448 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRP 311
S T TYDL SF+S+ + + LAT +K++P + + L+P
Sbjct: 9 SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKP 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,814,933
Number of Sequences: 59808
Number of extensions: 382455
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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