Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0098.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 143 4e-34
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 143 4e-34
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 143 4e-34
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 115 1e-25
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 35 0.19
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 35 0.19
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.19
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.19
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.19
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 35 0.19
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 7.2
AL442071-1|CAH73668.1| 5430|Homo sapiens microtubule-actin cross... 29 9.5
AL365277-7|CAI16417.1| 5430|Homo sapiens microtubule-actin cross... 29 9.5
AL355477-1|CAH70156.1| 5430|Homo sapiens microtubule-actin cross... 29 9.5
AL137853-1|CAI21814.1| 5430|Homo sapiens microtubule-actin cross... 29 9.5
AK127519-1|BAC87016.1| 1062|Homo sapiens protein ( Homo sapiens ... 29 9.5
AF325341-1|AAL39000.1| 4631|Homo sapiens macrophin 1 isoform 2 p... 29 9.5
AF141968-1|AAF06360.1| 5373|Homo sapiens trabeculin-alpha protein. 29 9.5
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 143 bits (347), Expect = 4e-34
Identities = 66/79 (83%), Positives = 73/79 (92%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKCVRVQLIKNGKK
Sbjct: 62 PNSAIRKCVRVQLIKNGKK 80
Score = 116 bits (280), Expect = 5e-26
Identities = 55/58 (94%), Positives = 55/58 (94%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 143 bits (347), Expect = 4e-34
Identities = 66/79 (83%), Positives = 73/79 (92%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKCVRVQLIKNGKK
Sbjct: 62 PNSAIRKCVRVQLIKNGKK 80
Score = 116 bits (280), Expect = 5e-26
Identities = 55/58 (94%), Positives = 55/58 (94%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 143 bits (347), Expect = 4e-34
Identities = 66/79 (83%), Positives = 73/79 (92%)
Frame = +1
Query: 1 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 181 PNSAIRKCVRVQLIKNGKK 237
PNSAIRKCVRVQLIKNGKK
Sbjct: 62 PNSAIRKCVRVQLIKNGKK 80
Score = 116 bits (280), Expect = 5e-26
Identities = 55/58 (94%), Positives = 55/58 (94%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
P DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 115 bits (276), Expect = 1e-25
Identities = 54/57 (94%), Positives = 54/57 (94%)
Frame = +3
Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 422
P DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 3 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.19
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 106 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.19
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 106 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.19
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 106 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.19
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 106 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.19
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 106 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.19
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 106 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 7.2
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 84 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 212
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
>AL442071-1|CAH73668.1| 5430|Homo sapiens microtubule-actin
crosslinking factor 1 protein.
Length = 5430
Score = 29.5 bits (63), Expect = 9.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 367 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP-SRGRMRSLS 233
FT+L+ P + T L+ P T +T S S+ WFR+P +R + ++S
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAIS 578
>AL365277-7|CAI16417.1| 5430|Homo sapiens microtubule-actin
crosslinking factor 1 protein.
Length = 5430
Score = 29.5 bits (63), Expect = 9.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 367 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP-SRGRMRSLS 233
FT+L+ P + T L+ P T +T S S+ WFR+P +R + ++S
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAIS 578
>AL355477-1|CAH70156.1| 5430|Homo sapiens microtubule-actin
crosslinking factor 1 protein.
Length = 5430
Score = 29.5 bits (63), Expect = 9.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 367 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP-SRGRMRSLS 233
FT+L+ P + T L+ P T +T S S+ WFR+P +R + ++S
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAIS 578
>AL137853-1|CAI21814.1| 5430|Homo sapiens microtubule-actin
crosslinking factor 1 protein.
Length = 5430
Score = 29.5 bits (63), Expect = 9.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 367 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP-SRGRMRSLS 233
FT+L+ P + T L+ P T +T S S+ WFR+P +R + ++S
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAIS 578
>AK127519-1|BAC87016.1| 1062|Homo sapiens protein ( Homo sapiens
cDNA FLJ45612 fis, clone BRTHA3025073, highly similar
to Actin cross-linking family protein 7. ).
Length = 1062
Score = 29.5 bits (63), Expect = 9.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 367 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP-SRGRMRSLS 233
FT+L+ P + T L+ P T +T S S+ WFR+P +R + ++S
Sbjct: 692 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAIS 738
>AF325341-1|AAL39000.1| 4631|Homo sapiens macrophin 1 isoform 2
protein.
Length = 4631
Score = 29.5 bits (63), Expect = 9.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 367 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP-SRGRMRSLS 233
FT+L+ P + T L+ P T +T S S+ WFR+P +R + ++S
Sbjct: 351 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAIS 397
>AF141968-1|AAF06360.1| 5373|Homo sapiens trabeculin-alpha protein.
Length = 5373
Score = 29.5 bits (63), Expect = 9.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 367 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP-SRGRMRSLS 233
FT+L+ P + T L+ P T +T S S+ WFR+P +R + ++S
Sbjct: 497 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAIS 543
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,176,293
Number of Sequences: 237096
Number of extensions: 1768973
Number of successful extensions: 6120
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6120
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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