Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0098.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   147   5e-36
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.029
AF016430-6|AAK95869.1|  274|Caenorhabditis elegans Hypothetical ...    30   1.1  
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.8  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  147 bits (357), Expect = 5e-36
 Identities = 65/79 (82%), Positives = 73/79 (92%)
 Frame = +1

Query: 1   GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
           GKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQ
Sbjct: 2   GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQ 61

Query: 181 PNSAIRKCVRVQLIKNGKK 237
           PNSAIRKCVRVQLIKNGKK
Sbjct: 62  PNSAIRKCVRVQLIKNGKK 80



 Score =  108 bits (260), Expect = 3e-24
 Identities = 48/58 (82%), Positives = 53/58 (91%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
           P DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 86  PNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 124 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>AF016430-6|AAK95869.1|  274|Caenorhabditis elegans Hypothetical
           protein C05C8.9a protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 340 MSPTA*PLRPNPATSTSSFSSMWFRQPSRGRMRSLSFR 227
           + P   P + +P T    + S W R P+ G MR LS R
Sbjct: 200 LEPGRAPKKYDPVTRYHFYKSEWDRHPAPGEMRRLSLR 237


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 69  VRPSLFTTVVHVLTRRSYSSG 7
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 361 TLKRTPGMSPTA*PLRPNPATSTSS 287
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 361 TLKRTPGMSPTA*PLRPNPATSTSS 287
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,430
Number of Sequences: 27780
Number of extensions: 261998
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)