Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0098.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   121   4e-28
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   113   6e-26
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    29   3.1  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   5.4  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   5.4  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  121 bits (291), Expect = 4e-28
 Identities = 55/79 (69%), Positives = 64/79 (81%)
 Frame = +1

Query: 1   GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
           GK RG+   RK    R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2   GKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 181 PNSAIRKCVRVQLIKNGKK 237
           PNSAIRKC RVQLIKNGKK
Sbjct: 61  PNSAIRKCARVQLIKNGKK 79



 Score =  113 bits (273), Expect = 6e-26
 Identities = 51/58 (87%), Positives = 56/58 (96%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
           P DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 85  PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  113 bits (273), Expect = 6e-26
 Identities = 51/58 (87%), Positives = 56/58 (96%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 425
           P DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 85  PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score =  112 bits (269), Expect = 2e-25
 Identities = 53/79 (67%), Positives = 61/79 (77%)
 Frame = +1

Query: 1   GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
           GK RG+   RK    R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAKQ
Sbjct: 2   GKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQ 60

Query: 181 PNSAIRKCVRVQLIKNGKK 237
           PNSAIRKC RVQLIKNGKK
Sbjct: 61  PNSAIRKCARVQLIKNGKK 79


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 28/77 (36%), Positives = 35/77 (45%)
 Frame = -1

Query: 457 DSRSLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSS 278
           DSRS     +Y   RS     R R  + +   +  R+   SP A  LR +PA STS    
Sbjct: 198 DSRSPSRGRSYSKSRS-----RGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSP- 251

Query: 277 MWFRQPSRGRMRSLSFR 227
              R  SR + RSLS R
Sbjct: 252 ---RSRSRSKSRSLSPR 265


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 61  WADKEFKKAHMGTKWKANPFGGASHAKG 144
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 61  WADKEFKKAHMGTKWKANPFGGASHAKG 144
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,211,537
Number of Sequences: 28952
Number of extensions: 249740
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)