Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0097.Seq
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.9  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   2.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.9  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   8.9  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   8.9  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   8.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +3

Query: 78  RGYQSLRRRHNEWSSCANHQLDCSI*RATGNYSRT 182
           RGY+  RR        A  Q D     ATG Y  T
Sbjct: 204 RGYEDFRRDFLRTYWSAKRQRDIRFQIATGRYDET 238


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 136 SWIVQFEGPQEITRVLELFSNSE 204
           SW+  F+G   ITR +  +  S+
Sbjct: 915 SWVAPFDGNSPITRYMIEYKQSK 937


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 298 LSLANPRLYTNSRTLF 345
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 190 FSNSEDLMDEVLNTDNVVFVEPFSTMLLEVIGIRCPL 300
           F N   ++   ++  +  F+EPF  M    + +R PL
Sbjct: 362 FHNMGHILIGYIHDPDHRFLEPFGVMADPAVDLRDPL 398


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = +1

Query: 439 WRSLNSCRTLRTLGETWLIPRIRRQMPIWL 528
           W  + S   +  + + +  PR R+ + +WL
Sbjct: 635 WSDMLSVGNMTLILDKFFFPRWRQTLAMWL 664


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 268 LLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSAIRSIFTVALFR 414
           ++ +I + C L   N R   N+ T     +   +  +A  S  T  LF+
Sbjct: 165 IITMINMNCALWYINCRAVGNASTALAESFQNVLVPTASNSKSTKVLFK 213


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 268 LLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSAIRSIFTVALFR 414
           ++ +I + C L   N R   N+ T     +   +  +A  S  T  LF+
Sbjct: 165 IITMINMNCALWYINCRAVGNASTALAESFQNVLVPTASNSKSTKVLFK 213


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 268 LLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSAIRSIFTVALFR 414
           ++ +I + C L   N R   N+ T     +   +  +A  S  T  LF+
Sbjct: 165 IITMINMNCALWYINCRAVGNASTALAESFQNVLVPTASNSKSTKVLFK 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,875
Number of Sequences: 336
Number of extensions: 3069
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)