Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0097.Seq
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   120   1e-28
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   119   3e-28
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   115   4e-27
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   0.99 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   1.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.7  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   2.3  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    26   3.0  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   5.3  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   7.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.2  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  120 bits (290), Expect = 1e-28
 Identities = 52/84 (61%), Positives = 69/84 (82%)
 Frame = -2

Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
           +RIRGIN + PK RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ +G PNLK+VRE
Sbjct: 95  IRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRE 154

Query: 329 LVYKRGFAKLSGQRIPITSNSIVE 258
           L+YKRGF K++ QRI ++ N+I+E
Sbjct: 155 LLYKRGFGKVNKQRIALSDNAIIE 178



 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 39/71 (54%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = -1

Query: 252 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNRE 76
           L K++I+ +EDLIHEI+TVG  FK A+NF+WPF+L++P GGWR +K  H+++GGD G R+
Sbjct: 181 LGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRD 240

Query: 75  DKINDLLRRMV 43
           + IN L+R+M+
Sbjct: 241 EHINSLVRKML 251


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  119 bits (286), Expect = 3e-28
 Identities = 50/84 (59%), Positives = 68/84 (80%)
 Frame = -2

Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
           +RIRGIN + PK RK++QL RL QINNG+FV+ NKA   ML++ EPY+ +G PN K+VRE
Sbjct: 94  VRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRE 153

Query: 329 LVYKRGFAKLSGQRIPITSNSIVE 258
           L+YKRGF K++ QRIP++ N+I+E
Sbjct: 154 LIYKRGFGKVNKQRIPLSDNAIIE 177



 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = -1

Query: 252 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNRE 76
           L K++I+ VEDLIHEI+TVG  FK A+NFLWPFKL++P GGWR +K  H+++GGD G R+
Sbjct: 180 LGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRD 239

Query: 75  DKINDLLRRMV 43
           + IN L+++M+
Sbjct: 240 EHINGLVQKML 250


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  115 bits (277), Expect = 4e-27
 Identities = 50/85 (58%), Positives = 67/85 (78%)
 Frame = -2

Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
           +RI G+  + PK+RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G PNL SVRE
Sbjct: 93  IRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRE 152

Query: 329 LVYKRGFAKLSGQRIPITSNSIVEK 255
           L+YKRGF K++GQRI ++ N+++E+
Sbjct: 153 LIYKRGFGKINGQRIALSDNALIEE 177



 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = -1

Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFGN 82
           E L K+++I +ED+IHEI+ VG  FK  + FLWPF L         KK  H+ +G   G 
Sbjct: 177 EALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGY 236

Query: 81  REDKINDLLRRMV 43
             ++IN+L+++ V
Sbjct: 237 CGEEINELIKKQV 249


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 109 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 204
           MNGL  P   W +   GP  + R++  F   E
Sbjct: 75  MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 122 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLW 250
           LR P   L  L+GH   +  L +SP  +     SST   +C+W
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIW 353


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 16   FYNYKSIYLNHPPEKIVDLVFAVTKVSAVDIMNGLLAPTTSWIVQFEGPQEITRVLELFS 195
            F  +  ++  HP   +      + K+ A+ I++  L       VQ +   E+ ++  LF 
Sbjct: 1729 FSIFYEVFFQHPSTNVYANDEGI-KIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFG 1785

Query: 196  NSEDLMDEVLN 228
            NSED+M + L+
Sbjct: 1786 NSEDVMIKQLS 1796


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
 Frame = +1

Query: 70  LVFAVTKVSAVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFV 249
           L+ +  KVS   +++G L+   ++I Q +    +   + +FS + D+  + + T N +F 
Sbjct: 121 LMSSTDKVSRKTMISGALSRALAYINQVQNKNTLRSRILIFSLTGDVALQYIPTMNCIFC 180

Query: 250 EPFSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSAIRSIFTVALFRR-TNT 426
                + + V  I                   K+  P+ +    + S+F     R+  NT
Sbjct: 181 AQKKNIPINVCNIEGGTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNT 240

Query: 427 P 429
           P
Sbjct: 241 P 241


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 142 IVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFVEPFSTML---LEVIGIRCPLSLAN 312
           ++ F     I   L LFS  +D+M+  LN  +  +       L    +++G R PLSL +
Sbjct: 75  LLNFTQKNPILASLFLFSTDKDIMNSSLNPASQAYTFDLGRTLPISEDILGYRKPLSLTD 134


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 395 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKGSTNTTLSV 228
           N  +I+ PY     GYP +K  + L YK    KLS   +PI +  I      N   ++
Sbjct: 35  NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCIPYHSVENLNFNI 91


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 1   SGRVFFYNYKSIYLNHPPEKIVDLVFAVTKVSAVDIMNGLLA 126
           SGR F +N  + +  HP   +   V  +  +   DI+NG+++
Sbjct: 628 SGRNFIFNDCTRFYEHPTLSVFVKVEGIDFMKDDDIVNGIVS 669


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 142  IVQFEGPQEITRVLE-LFSNSEDLMDEVLNTDNVVFVEPFSTMLLEVIGIRCPLSLANPR 318
            IV+    +E+   ++ LFSN+ +L  E +      FV+    +  E I   C L L+NPR
Sbjct: 1137 IVREYSSREVVMAVDMLFSNTRNLGSEGIYD----FVKALIEVSWEEI--ECSLELSNPR 1190

Query: 319  LYTNSRTLFKLGY 357
            L++  + L ++ Y
Sbjct: 1191 LFSLQK-LVEISY 1202


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 175 RVLELFSNSEDLMDE--VLNTDNVVFVEP 255
           RV E+F +S DL++E  +   DNV   EP
Sbjct: 300 RVAEIFKDSPDLLEEFKLFLPDNVDSTEP 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,058
Number of Sequences: 5004
Number of extensions: 50625
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)