Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0097.Seq
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 134 5e-32
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 134 5e-32
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 86 2e-17
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 30 1.0
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 4.0
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 5.3
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 27 9.3
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 134 bits (323), Expect = 5e-32
Identities = 58/86 (67%), Positives = 75/86 (87%)
Frame = -2
Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVRE
Sbjct: 90 VRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRE 149
Query: 329 LVYKRGFAKLSGQRIPITSNSIVEKG 252
L+YKRG+ KL+ QRIP+ +N ++E+G
Sbjct: 150 LIYKRGYGKLNKQRIPLQNNKVIEEG 175
Score = 115 bits (276), Expect = 3e-26
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
EGL KH+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNR
Sbjct: 174 EGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNR 233
Query: 78 EDKINDLLRRM 46
ED IN+L+RRM
Sbjct: 234 EDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 134 bits (323), Expect = 5e-32
Identities = 58/85 (68%), Positives = 75/85 (88%)
Frame = -2
Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVRE
Sbjct: 89 VRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRE 148
Query: 329 LVYKRGFAKLSGQRIPITSNSIVEK 255
L+YKRG+ KL+ QRIP+T+N ++E+
Sbjct: 149 LIYKRGYGKLNKQRIPLTNNKVIEE 173
Score = 111 bits (268), Expect = 3e-25
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
+GL KH+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNR
Sbjct: 179 QGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNR 238
Query: 78 EDKINDLLRRM 46
E+ IN+L+RRM
Sbjct: 239 ENYINELIRRM 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/91 (39%), Positives = 61/91 (67%)
Frame = -2
Query: 527 SQIGICLRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 348
S++ +RI G + P +R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PN
Sbjct: 86 SKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPN 145
Query: 347 LKSVRELVYKRGFAKLSGQRIPITSNSIVEK 255
LK+V++L+YK+G L + P+TSN ++EK
Sbjct: 146 LKNVKDLIYKKGRGFLDKEPFPLTSNDLIEK 176
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/56 (46%), Positives = 36/56 (64%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGD 91
+ L ++ IIC+EDL+HEI +VG F+ ASNFL PFKL P + K + DG +
Sbjct: 176 KALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGAE 231
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 122 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSPSQQC 268
LR P + GH+K ++Y+ F T +++ +ST L LW + C
Sbjct: 545 LRNPSAPVHVFGGHKKAVSYVKFLSTNELA--SASTDSTLRLWDVKENC 591
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/72 (22%), Positives = 36/72 (50%)
Frame = +1
Query: 70 LVFAVTKVSAVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFV 249
+V A +++ + + L+ + W+ G ++LEL N+E + D+VL + + +
Sbjct: 1112 IVSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVM 1171
Query: 250 EPFSTMLLEVIG 285
++L +IG
Sbjct: 1172 PKIYSLLSNLIG 1183
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 372 LHCLGIPQLKECP*VSIQTWIRQAEW 295
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 173 LAYLNFSPTVKISWMRSSTQIMLCL 247
L++ +F PTV++ +RS T + LCL
Sbjct: 192 LSHCSFRPTVEVVSLRSLTSLDLCL 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,931,580
Number of Sequences: 37544
Number of extensions: 318503
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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