Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0097.Seq
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      146   1e-35
SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   29   3.1  
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 27   9.6  
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  
SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)                       27   9.6  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  146 bits (353), Expect = 1e-35
 Identities = 67/91 (73%), Positives = 79/91 (86%)
 Frame = -2

Query: 527 SQIGICLRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 348
           +++   +RIRGIN VSPKVRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPN
Sbjct: 84  ARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPN 143

Query: 347 LKSVRELVYKRGFAKLSGQRIPITSNSIVEK 255
           LKSVREL+YKRG+ K+  QR+ +T NSIVEK
Sbjct: 144 LKSVRELIYKRGYGKVDKQRVALTDNSIVEK 174



 Score =  121 bits (291), Expect = 4e-28
 Identities = 54/69 (78%), Positives = 60/69 (86%)
 Frame = -1

Query: 252 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 73
           L KH IICVEDLIHEIFTVGE FK ASNFLWPFKL++P GG+RKKT H+V+GGD GNRED
Sbjct: 176 LGKHGIICVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNRED 235

Query: 72  KINDLLRRM 46
           KIN L+R M
Sbjct: 236 KINGLVRVM 244


>SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 28  KSIYLNHPPEKIVDLVFAVTKVSAVDIMNG 117
           K IYL HP   +VD+  AV   +AVDI +G
Sbjct: 13  KQIYLYHPTPNLVDVSKAVFMGAAVDIRSG 42


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 237 IICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 115
           + C+   + E+ TV E F+   NFL  FK+  P     KKT
Sbjct: 344 LTCLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384


>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +1

Query: 235 NVVFVEPFSTMLLEVIGIRCPLSLANPRLYTNSRTLFKL 351
           NV  V P +T+++  + +R   SLANP LYT  +T F+L
Sbjct: 272 NVYAVLP-TTVIILTLFLRFLSSLANPLLYTFFKTDFQL 309


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 216 IHEIFTVGEKFKYASNFLWPFKLNN 142
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 128 GARRPFIMSTAETLV--TAKTRSTIFSG 51
           G RRPFI++  ETL+    +T ST  SG
Sbjct: 137 GLRRPFIINNEETLMHYATETESTCSSG 164


>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 128 GARRPFIMSTAETLV--TAKTRSTIFSG 51
           G RRPFI++  ETL+    +T ST  SG
Sbjct: 618 GLRRPFIINNEETLMHYATETESTCSSG 645


>SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)
          Length = 200

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 205 DLMDEVLNTDNVVFVEP 255
           D++ E+LNTD V+F+EP
Sbjct: 181 DIICELLNTDKVLFLEP 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,805
Number of Sequences: 59808
Number of extensions: 370548
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)