Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0097.Seq
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   135   2e-32
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   2.1  
U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    27   6.3  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  135 bits (327), Expect = 2e-32
 Identities = 58/90 (64%), Positives = 76/90 (84%)
 Frame = -2

Query: 524 QIGICLRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNL 345
           ++   +RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN 
Sbjct: 84  KVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNN 143

Query: 344 KSVRELVYKRGFAKLSGQRIPITSNSIVEK 255
           K++ +L+YKRG+AK+ G R+PIT N+IVE+
Sbjct: 144 KTIHDLLYKRGYAKVDGNRVPITDNTIVEQ 173



 Score =  124 bits (300), Expect = 3e-29
 Identities = 54/72 (75%), Positives = 62/72 (86%)
 Frame = -1

Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
           + L K NIIC+EDL HEI TVG  FK A+NFLWPFKLNNPTGGW KKT H+V+GGDFGNR
Sbjct: 173 QSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNR 232

Query: 78  EDKINDLLRRMV 43
           ED+IN+LLR+MV
Sbjct: 233 EDQINNLLRKMV 244


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 354 VSPSNVRLGDT*HIHSSLIQTYEHTIVYLAQSKQLQNF 467
           ++PS  RL    H H+ L Q +++ I    Q K++Q F
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFF 533


>U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical
           protein B0310.3 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +1

Query: 49  PPEKIVDLVFAVTKVSAVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLN 228
           PP K+V+    V K+  ++    ++ P ++  V F   +E+ RV+++    E    + L 
Sbjct: 262 PPTKVVENKEEVIKLEVIEQPEPIVLPVSTPTVTFSRFEEMKRVVKVEKAQESAKTKALK 321

Query: 229 TDNVVFV 249
               + +
Sbjct: 322 KSKAISI 328


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 82  VTKVSAVDIMNGLLAPTTSWIVQFEGPQEITR 177
           + K+S  D++N L A TT +    +GP  +TR
Sbjct: 499 IDKISGCDLINPLNATTTGYCPASDGPGILTR 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,742,709
Number of Sequences: 27780
Number of extensions: 281566
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)