Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0097.Seq
(528 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 27 0.16
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 23 1.5
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 1.9
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 1.9
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 23 2.6
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 2.6
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 22 4.5
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 4.5
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 21 7.8
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 7.8
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 21 7.8
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 26.6 bits (56), Expect = 0.16
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 269 CWK*LVYVVHSAWRIHVCILTHGHSLSWG 355
CW + Y+V AW I ++ L WG
Sbjct: 71 CWMNVYYIVILAWAIFYFFMSMRSELPWG 99
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 23.4 bits (48), Expect = 1.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 202 EDLMDEVLNTDNVVFVEPFSTMLLEVIGIRCPLSLAN 312
E L D V V + ++E+IGI C L LAN
Sbjct: 184 EALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLAN 220
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.0 bits (47), Expect = 1.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = +2
Query: 269 CWK*LVYVVHSAWRIHVCILTHGHSLSW 352
CW + Y++ AW + +++ L W
Sbjct: 109 CWTNIYYIIILAWALFYLLVSLRIDLPW 136
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.0 bits (47), Expect = 1.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = +2
Query: 269 CWK*LVYVVHSAWRIHVCILTHGHSLSW 352
CW + Y++ AW + +++ L W
Sbjct: 162 CWTNIYYIIILAWALFYLLVSLRIDLPW 189
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 22.6 bits (46), Expect = 2.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 116 VFLRQPPVGLFNLKG 160
+F PP G FN+KG
Sbjct: 225 LFYPYPPYGTFNIKG 239
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.6 bits (46), Expect = 2.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 409 FRRTNTPLFIWRSLNSCRTLRTLG 480
F TP+FI+ S N+ L LG
Sbjct: 96 FMMIKTPIFIYNSFNTGFALGNLG 119
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.8 bits (44), Expect = 4.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 106 IMNGLLAPTTSWIVQFEG 159
I+NG P T+W+ F G
Sbjct: 153 IVNGKRVPPTNWVGVFGG 170
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.8 bits (44), Expect = 4.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 106 IMNGLLAPTTSWIVQFEG 159
I+NG P T+W+ F G
Sbjct: 153 IVNGKRVPPTNWVGVFGG 170
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 21.0 bits (42), Expect = 7.8
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = +2
Query: 143 LFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSPSQQCCWK 277
L L+ K YL+ + ++ S T+ + +W +++ WK
Sbjct: 20 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 64
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.0 bits (42), Expect = 7.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 129 NHQLDCSI*RATGNYS 176
N+ DC+I +TGN++
Sbjct: 186 NYTTDCTIEYSTGNFT 201
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 21.0 bits (42), Expect = 7.8
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = -2
Query: 386 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIV 261
R+ +PY W + N K +V A R+ I + I+
Sbjct: 106 RLLQPYPDWSWANYKDCSGIVSAYKIAIDKFDRLWILDSGII 147
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,351
Number of Sequences: 438
Number of extensions: 3284
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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