Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0097.Seq
(528 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 130 4e-31
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 130 4e-31
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 130 4e-31
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 129 1e-30
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 129 1e-30
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 128 3e-30
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 80 1e-15
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 29 1.5
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 1.5
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 1.5
At1g18020.1 68414.m02229 12-oxophytodienoate reductase, putative... 29 2.6
At1g17990.1 68414.m02226 12-oxophytodienoate reductase, putative... 29 2.6
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 28 3.4
At1g09400.1 68414.m01051 12-oxophytodienoate reductase, putative... 28 3.4
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 28 4.5
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 28 4.5
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 27 5.9
At2g41700.1 68415.m05151 ABC transporter family protein similar ... 27 5.9
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr... 27 7.8
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (315), Expect = 4e-31
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = -2
Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
+RIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 89 IRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKE 148
Query: 329 LVYKRGFAKLSGQRIPITSNSIVEKG 252
L+YKRGF KL+ QR +T NSIV++G
Sbjct: 149 LIYKRGFGKLNHQRTALTDNSIVDQG 174
Score = 110 bits (264), Expect = 6e-25
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
+GL KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNR
Sbjct: 173 QGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNR 232
Query: 78 EDKINDLLRRM 46
E+ IN+L+RRM
Sbjct: 233 ENFINELVRRM 243
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (315), Expect = 4e-31
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = -2
Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
+RIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 89 IRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKE 148
Query: 329 LVYKRGFAKLSGQRIPITSNSIVEKG 252
L+YKRGF KL+ QR +T NSIV++G
Sbjct: 149 LIYKRGFGKLNHQRTALTDNSIVDQG 174
Score = 110 bits (264), Expect = 6e-25
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
+GL KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNR
Sbjct: 173 QGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNR 232
Query: 78 EDKINDLLRRM 46
E+ IN+L+RRM
Sbjct: 233 ENFINELVRRM 243
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (315), Expect = 4e-31
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = -2
Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
+RIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+E
Sbjct: 89 IRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKE 148
Query: 329 LVYKRGFAKLSGQRIPITSNSIVEKG 252
L+YKRGF KL+ QR +T NSIV++G
Sbjct: 149 LIYKRGFGKLNHQRTALTDNSIVDQG 174
Score = 110 bits (264), Expect = 6e-25
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
+GL KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNR
Sbjct: 173 QGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNR 232
Query: 78 EDKINDLLRRM 46
E+ IN+L+RRM
Sbjct: 233 ENFINELVRRM 243
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 129 bits (312), Expect = 1e-30
Identities = 57/85 (67%), Positives = 73/85 (85%)
Frame = -2
Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
+RIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+E
Sbjct: 92 IRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKE 151
Query: 329 LVYKRGFAKLSGQRIPITSNSIVEK 255
L+YKRG+ KL+ QRI +T NSIV++
Sbjct: 152 LIYKRGYGKLNHQRIALTDNSIVDQ 176
Score = 107 bits (257), Expect = 5e-24
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
+ L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNR
Sbjct: 176 QALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNR 235
Query: 78 EDKINDLLRRM 46
E+ IN+L+RRM
Sbjct: 236 ENFINELVRRM 246
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 129 bits (312), Expect = 1e-30
Identities = 57/85 (67%), Positives = 73/85 (85%)
Frame = -2
Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
+RIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+E
Sbjct: 87 IRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKE 146
Query: 329 LVYKRGFAKLSGQRIPITSNSIVEK 255
L+YKRG+ KL+ QRI +T NSIV++
Sbjct: 147 LIYKRGYGKLNHQRIALTDNSIVDQ 171
Score = 107 bits (257), Expect = 5e-24
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
+ L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNR
Sbjct: 171 QALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNR 230
Query: 78 EDKINDLLRRM 46
E+ IN+L+RRM
Sbjct: 231 ENFINELVRRM 241
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 128 bits (308), Expect = 3e-30
Identities = 56/85 (65%), Positives = 73/85 (85%)
Frame = -2
Query: 509 LRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRE 330
+RIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+E
Sbjct: 87 IRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKE 146
Query: 329 LVYKRGFAKLSGQRIPITSNSIVEK 255
L+YKRG+ KL+ QRI +T NSIVE+
Sbjct: 147 LIYKRGYGKLNHQRIALTDNSIVEQ 171
Score = 106 bits (254), Expect = 1e-23
Identities = 47/71 (66%), Positives = 55/71 (77%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 79
+ L KH IIC EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNR
Sbjct: 171 QALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNR 230
Query: 78 EDKINDLLRRM 46
E+ IN+L+RRM
Sbjct: 231 ENFINELIRRM 241
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 79.8 bits (188), Expect = 1e-15
Identities = 32/91 (35%), Positives = 57/91 (62%)
Frame = -2
Query: 527 SQIGICLRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 348
S + +RI+G N + PK +++L +L+ + GVF + + L +PY+ +GYPN
Sbjct: 85 SDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPN 144
Query: 347 LKSVRELVYKRGFAKLSGQRIPITSNSIVEK 255
KSV++L+YK+G + G +P+T N+I+E+
Sbjct: 145 DKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQ 175
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -1
Query: 258 EGLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG--WRKKTIHYVDGGDFG 85
+ L +H I+ +EDL++EI VG+ F+ FL P KLN P RKK + + +GGD G
Sbjct: 175 QALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQV-FSEGGDTG 233
Query: 84 NREDKINDLLRRM 46
NREDKINDL+ +M
Sbjct: 234 NREDKINDLISKM 246
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +1
Query: 52 PEKIVDLVFAVTKVSAVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNT 231
P+ + LV A ++ + + LA W+ G ++LEL N+E L+D+VL
Sbjct: 1102 PKTDMWLVSASMRILDGECSSTALAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQ 1161
Query: 232 DNVVFVEPFSTMLLEVIG 285
+ + + ++L ++G
Sbjct: 1162 ELALAMPKIYSILARLLG 1179
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 183 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 88
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 183 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 88
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At1g18020.1 68414.m02229 12-oxophytodienoate reductase, putative
similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
Length = 269
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 245 LWSPSQQCCWK*LVYVVHSAWRIHVCILTHG 337
LW+ Q WK +V VHS I C + HG
Sbjct: 77 LWNRDQVEAWKPIVDAVHSKGGIFFCQIWHG 107
>At1g17990.1 68414.m02226 12-oxophytodienoate reductase, putative
similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
Length = 269
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 245 LWSPSQQCCWK*LVYVVHSAWRIHVCILTHG 337
LW+ Q WK +V VHS I C + HG
Sbjct: 77 LWNRDQVEAWKPIVDAVHSKGGIFFCQIWHG 107
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 122 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSPS 259
LR P + L + GH K ++Y+ F + + + SST L LW S
Sbjct: 690 LRNPKIPLCTMIGHSKTVSYVKFVDSSTL--VSSSTDNTLKLWDLS 733
>At1g09400.1 68414.m01051 12-oxophytodienoate reductase, putative
similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
Length = 324
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/74 (31%), Positives = 30/74 (40%)
Frame = +2
Query: 128 QPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSPSQQCCWK*LVYVVHSAW 307
QP V L+ + R L S +S + Q M +W Q WK +V VHS
Sbjct: 26 QPHVALYYCQ--RTTPGGLLISEATGVSETAMAYQNMPGIWRKEQIEAWKPIVDAVHSHG 83
Query: 308 RIHVCILTHGHSLS 349
I C L H +S
Sbjct: 84 GIFFCQLWHAGRVS 97
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 122 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSPS 259
LR P + L + GH K ++Y+ F + + + SST L LW S
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDLS 691
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 122 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSPS 259
LR P + L + GH K ++Y+ F + + + SST L LW S
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDLS 691
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 152 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWS 253
LKGH+K + L FS + I + S +C WS
Sbjct: 900 LKGHQKRITGLAFSTALNI-LVSSGADAQICFWS 932
>At2g41700.1 68415.m05151 ABC transporter family protein similar to
ATP-binding cassette transporter ABCA1 GI:18031705 from
[Arabidopsis thaliana]
Length = 1822
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 388 SIFTVALFRRTNTPLFIWRSLNSCRTLRTLGETWLIPRI 504
SI + ++F R LFI R+ ++CR +T+ ++IP +
Sbjct: 886 SIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAV 924
>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 886
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 216 IHEIFTVGEKFKYASNFLWPFKLNNPTGGW 127
++ + ++ E F Y NF +K N+P GW
Sbjct: 327 VNTLLSIVEAFGYPVNFAEKWKGNDPCSGW 356
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,070,820
Number of Sequences: 28952
Number of extensions: 259847
Number of successful extensions: 673
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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