Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0095.Seq
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.65 
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   6.0  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   8.0  

>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 538 LDVVAVSQAPSPESNPDSP-LPVTTMVVAETTIRK 639
           +D+VA +Q       PD+   P+ T VVA+TT+RK
Sbjct: 1   MDIVAETQIEEESLIPDATSTPLETEVVADTTLRK 35


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 223 NRRFLERRLTEICSANVSVSPR-MRCTDSAAHKCNYELFNRNNFSIRYWSWNYR 381
           NR  +  RL     ++ S + R +R    AA KC +E      FSI + S+N++
Sbjct: 44  NRILIAVRLFSFAFSSFSTTLRILRDFIIAASKCEFEKIWSTTFSISFLSFNFK 97


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 490 TTSPCRGG*FAR-LLPSLDVVAVSQAPSPESNPDSPLPVTT 609
           TT+P + G  +     ++ V++V+ +P+P +  + P PV+T
Sbjct: 158 TTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVST 198


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 622 LRLPWLSRVTGNQGSIPEREPEKRLP 545
           LRL +L +   NQ S  E++ EKR+P
Sbjct: 283 LRLQFLIQQRNNQSSNEEQKQEKRVP 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,774
Number of Sequences: 5004
Number of extensions: 57700
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)