Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0095.Seq
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           38   0.010
05_03_0087 + 8286700-8288088                                           32   0.51 
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    29   3.6  
11_01_0337 - 2519732-2521093                                           29   4.8  
10_08_0900 - 21436508-21437521                                         29   4.8  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   8.3  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 445 PITRPRKSPVSLFFVTTSPCRGG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 618
           P ++ R +P SL    +  C+ G   RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 619 AETTIRKLIRQTFGK 663
            E   R+L  +  G+
Sbjct: 146 IELDDRRLDLEAVGR 160


>05_03_0087 + 8286700-8288088
          Length = 462

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 611 MVVTGNGESGFDSGEGA*ETATTSKEGSRRANYPPRHGEVVTKNNDTGLLRG 456
           +V+T +G +G   G+GA   +TTS + +R     PR    V    D  +L G
Sbjct: 32  VVLTPSGSTGNGDGDGALVVSTTSSDRNRTPRVRPRETTTVAAAADRSVLGG 83


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 223  NRRFLERRLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNFS 354
            N+R  E   + IC   ++    + C D+  H C+  L +  N +
Sbjct: 1263 NKRVCEEWFSRICDPMLNAGLALHCNDAVIHYCSSRLLDIRNLA 1306


>11_01_0337 - 2519732-2521093
          Length = 453

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 481 FFVTTSPCRGG*FARLLPSLDVVAVSQAPSPESN 582
           FF TT+  RGG  AR+  S D  AV+ A  P  +
Sbjct: 259 FFTTTAADRGGGSARVTASSDWAAVTDARPPREH 292


>10_08_0900 - 21436508-21437521
          Length = 337

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 287 RGDTDTFAEHISVSRRSKKRRFNIKILSRCSSVSVE 180
           R  TD F EH+ V+ R  + RF++ +  R  + +++
Sbjct: 54  RDTTDAFDEHLEVAVRRYQTRFSLPVTGRLDNATLD 89


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 340 RNNFSIRYWSWNYRGC 387
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,190
Number of Sequences: 37544
Number of extensions: 419203
Number of successful extensions: 1195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)