Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0095.Seq
         (705 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    34   0.43 
AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting pro...    31   5.3  

>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 34.3 bits (75), Expect = 0.43
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +1

Query: 463  KSPVSLFFVTTSPCR--GG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 621
            ++P  + ++TT P       F+ + PS+   +   + SPES P SPLPVT ++ +
Sbjct: 5614 RTPGDVSWMTTPPVEETSSGFSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668


>AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting
           protein (liprin), alpha 2  protein.
          Length = 170

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 244 RLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNF 351
           RL    S  +++ PR++C+ +    CN+EL   +NF
Sbjct: 3   RLLFFKSQGLALLPRLKCSGAIIAHCNFELLGSSNF 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,891,070
Number of Sequences: 237096
Number of extensions: 2232156
Number of successful extensions: 5686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5686
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)