Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0095.Seq
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077545-1|AAC26306.2| 506|Caenorhabditis elegans Hypothetical ... 29 2.4
AC024796-4|AAK29898.3| 539|Caenorhabditis elegans C-terminal sr... 29 3.2
AB096875-1|BAC76831.1| 539|Caenorhabditis elegans CSK-1 protein. 29 3.2
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 29 4.3
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 28 7.5
Z81588-2|CAB04712.1| 379|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr... 27 9.9
U23519-9|ABS19470.1| 203|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki... 27 9.9
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr... 27 9.9
>AF077545-1|AAC26306.2| 506|Caenorhabditis elegans Hypothetical
protein H41C03.3 protein.
Length = 506
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 229 RFLER-RLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
+F ER R C NV + P DSA H N +N I WNY
Sbjct: 200 QFHERLRAMAACLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250
>AC024796-4|AAK29898.3| 539|Caenorhabditis elegans C-terminal src
kinase protein 1 protein.
Length = 539
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 587 SGFDSGEGA*ET-ATTSKEGSRRANYPPRHGEVVTKNNDTGLLRG 456
SG D GA T ++TS S AN+ P ++++ N LLRG
Sbjct: 123 SGCDVAPGAASTTSSTSSHHSTAANHQPWFHSMISRENTEKLLRG 167
>AB096875-1|BAC76831.1| 539|Caenorhabditis elegans CSK-1 protein.
Length = 539
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 587 SGFDSGEGA*ET-ATTSKEGSRRANYPPRHGEVVTKNNDTGLLRG 456
SG D GA T ++TS S AN+ P ++++ N LLRG
Sbjct: 123 SGCDVAPGAASTTSSTSSHHSTAANHQPWFHSMISRENTEKLLRG 167
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 532 PSLDVVAVSQAPSP-ESNPDSPLPVT-TMVVAETTIRKLIRQTFGKMPSXVL*P 687
P+ ++ SQAP P ++ P SP+ T T+ +TT+ + T+ + ++ P
Sbjct: 774 PATPMLQASQAPQPLQAPPQSPMETTATVTYTKTTVPPSVANTWNTEKAQLISP 827
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 529 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 633
+P+ V+ ++ PS +S + VTT V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593
>Z81588-2|CAB04712.1| 379|Caenorhabditis elegans Hypothetical
protein T07D10.2 protein.
Length = 379
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 512 GNLRACCLPWMW*PFLRLPLR 574
GNL +C PW+W F R L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 346 CCG*KARSCICAPRCRC 296
CCG C C PRC C
Sbjct: 79 CCGCGCGCCCCRPRCCC 95
>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
protein F46C3.1 protein.
Length = 1077
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 508 GG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIR 636
GG +L+P+LD S + +N PLP+TT + E+TIR
Sbjct: 98 GGTSLQLMPTLDGRLFSYTHN--TNLIEPLPITTDSLLESTIR 138
>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
protein F46C3.1 protein.
Length = 1077
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 508 GG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIR 636
GG +L+P+LD S + +N PLP+TT + E+TIR
Sbjct: 98 GGTSLQLMPTLDGRLFSYTHN--TNLIEPLPITTDSLLESTIR 138
>U23519-9|ABS19470.1| 203|Caenorhabditis elegans Hypothetical
protein F26G1.11 protein.
Length = 203
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 214 LILNRRFLERRLTEICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRY 363
+I+ + R E +N++V + SA HK NYEL +F +RY
Sbjct: 83 IIIEHGCTKGRSEEEIQSNINVYSEFPISLSALHKHNYEL--NQDFELRY 130
>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
kinase protein.
Length = 1077
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 508 GG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIR 636
GG +L+P+LD S + +N PLP+TT + E+TIR
Sbjct: 98 GGTSLQLMPTLDGRLFSYTHN--TNLIEPLPITTDSLLESTIR 138
>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
translation initiationfactor 2 alpha kinase PEK protein.
Length = 1077
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 508 GG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIR 636
GG +L+P+LD S + +N PLP+TT + E+TIR
Sbjct: 98 GGTSLQLMPTLDGRLFSYTHN--TNLIEPLPITTDSLLESTIR 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,215
Number of Sequences: 27780
Number of extensions: 348963
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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