Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0095.Seq
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.92 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 296 HRIRGDTDTFAEHISVSRRSKKRRFNIKILSRCSSVSVE 180
           H   GD+   ++H  VSR S   +F   + +  +S+S++
Sbjct: 705 HSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSID 743


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 8   VAIRMPPVIPINH-----YLGVLKTN 70
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 8   VAIRMPPVIPINH-----YLGVLKTN 70
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 8   VAIRMPPVIPINH-----YLGVLKTN 70
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 280 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 378
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,733
Number of Sequences: 438
Number of extensions: 4429
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)