Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0094.Seq
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    28   1.4  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   3.2  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   7.3  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   7.3  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   7.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.7  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   9.7  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 222 LVAHLVLSGYRARRHLQH--KCRHLPSDISSK 311
           +V +LVLS +  RR +QH  K R++P DI  K
Sbjct: 148 VVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKK 179


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 527 KNWYIGTWQDTNAPSSSYPLGHD 595
           +NW +  W ++  PS++ PL +D
Sbjct: 576 ENWQLALWGESENPSNTAPLPYD 598


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = -2

Query: 544 TDVPIFAIKNGTNKWLAIDFNSEGIAPRNKNQTRKIIICEITGGRTSCESAAHFC-HEAV 368
           T   + +++N + +  A+D  SEG A     +  +I   EI G R    + A    H+ +
Sbjct: 352 TPTLVTSLQNNSIEVYALDVKSEGSAAPLTERASRISAIEIPGHRADVRTLALSANHDVI 411

Query: 367 INAFR--FDGWGSRCTVKAETLE 305
           ++        W  + T    T+E
Sbjct: 412 LSGANGSLKLWNKKTTSCIRTIE 434


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +3

Query: 162 KFTINVIVFVFFLSIRY--VDELVAHLVLSGYRARRHLQ---HKCRHLPSDISSK 311
           + +++ I  VFF+S+    + +     + SG   R  L    HKC++  +D+S K
Sbjct: 248 ELSLDAIRIVFFMSVSAGNLGDTALSYLYSGTAVRMSLAIGLHKCKNFSNDLSDK 302


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 541 DVPIFAIKNGTNKWLAIDFNSEGIAPRNKNQTRKIIICE 425
           D P   + + +  +LA DF  EG++  N +Q  K+ I E
Sbjct: 20  DGPSLRLNSDSLDFLARDFKVEGMSQDNFDQKTKLYITE 58


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 385  FCHEAVINAFRFDGWGSR 332
            +C+E  IN +    WGSR
Sbjct: 2005 YCYEGPINNYMIKSWGSR 2022


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 320 FYSTTAAPSVEPKRINYCFMAEMGSGLTRGPTTSYFANYNFAG 448
           F+S   A S  P  +     A+M    TRGP    FA   FAG
Sbjct: 194 FFSGFCASS--PLSVVAAAFADMFDNKTRGPAVCIFACITFAG 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,298
Number of Sequences: 5004
Number of extensions: 45140
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)