Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0094.Seq
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553... 32 0.47
05_05_0182 - 23045837-23046026,23046112-23046306,23046852-230470... 31 1.1
03_05_0290 - 22791338-22791925,22792012-22793196,22793835-227939... 29 3.3
02_01_0116 + 862401-862734,862823-863078,863177-863311,863395-86... 29 3.3
07_03_0290 - 16305703-16305990,16306119-16306307,16306386-163064... 28 5.7
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550... 28 5.7
11_06_0541 + 24771145-24775479 28 7.6
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424... 28 7.6
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 28 7.6
>12_02_0915 -
24252495-24253079,24253560-24254759,24255234-24255303,
24257127-24257188
Length = 638
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 472 IAPRNKNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVKAETLEL 302
+A N+ +I I +I GG + E A FC+ ++ ++ +RC AE LE+
Sbjct: 58 VASTNEESNDEIDISDIPGGPAAFEICAKFCYGMIVTLNAYNVLAARCA--AEYLEM 112
>05_05_0182 -
23045837-23046026,23046112-23046306,23046852-23047094,
23047456-23047496,23047703-23047813,23047965-23048216,
23048508-23048657,23048760-23048778,23049129-23049688
Length = 586
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 201 SIRYVDELVAHLVLSGYRARRHLQHKCRHLPSDISSKVSAFTV---QRLPHP 347
S Y+ L + R+RRH++H+ RH P ++S F +PHP
Sbjct: 151 SADYIPCLDNMRAIKALRSRRHMEHRERHCPVAPRPRLSTFKAIWYNNVPHP 202
>03_05_0290 -
22791338-22791925,22792012-22793196,22793835-22793904,
22795918-22795979
Length = 634
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -2
Query: 469 APRNKNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVKAETLEL 302
A N ++ I +I GG ++ E A FC+ ++ ++ +RC AE LE+
Sbjct: 59 ASSNVEGNEELDISDIPGGPSAFEICAKFCYGMIVTLNAYNVLAARCA--AEYLEM 112
>02_01_0116 +
862401-862734,862823-863078,863177-863311,863395-864721
Length = 683
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 225 VAHLVLSGYR--ARRHLQHKCRHLPSDISSKVSAFTVQRLPHPSNRNALITASWQKWAAD 398
V L LS +R A R R++PS I ++ F R+P +L+ W+K A
Sbjct: 564 VLALALSVFREVASRKEWRIRRYIPSTIGMAITFFMPPRVPVGMCIGSLVAYLWEKMDAG 623
Query: 399 SQEVLPPVISQIII 440
+L P ++ +I
Sbjct: 624 RGRMLSPALASGLI 637
>07_03_0290 -
16305703-16305990,16306119-16306307,16306386-16306419,
16307406-16307533,16307571-16307600,16307821-16307841,
16308467-16308537,16309394-16309415
Length = 260
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 536 YIGTWQDTNAPSSSYPLGHDDVYNFDISIFNNTMI 640
Y G ++ NA S ++ LG DD + F IS T I
Sbjct: 68 YTGVYRCINARSCAWSLGRDDKHRFTISSVCGTPI 102
>03_02_0080 +
5498638-5498699,5499121-5499190,5499551-5500711,
5500940-5501029,5501147-5501464
Length = 566
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 466 PRNKNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVKAETLEL 302
P ++ +I I +I GG + E A FC+ ++ ++ +RC AE LE+
Sbjct: 59 PTTGDENIEIHIHDIPGGAKAFEICAKFCYGMIVTLNAYNVIAARCA--AEYLEM 111
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 39 ILKVMQATPNKVNR-DRKFLQKVIKVNNKLVQLIVRV 146
++K QATPN N+ D +F + + K+ Q+ V++
Sbjct: 522 LVKAEQATPNPANQDDHEFTSAIQETKEKIAQIGVKI 558
>06_01_0590 -
4240260-4240883,4241063-4242238,4242691-4242760,
4243739-4243803
Length = 644
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 472 IAPRNKNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVK 320
I ++N T ++ I +I GG E A FC+ V+ ++ +RC +
Sbjct: 59 IIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVTLNAYNVVAARCAAE 109
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 100 FCRNFLSRLTLLGVACITFNM 38
FC +LS +T+LGVA I F++
Sbjct: 271 FCNLYLSCITILGVATIAFSL 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,339
Number of Sequences: 37544
Number of extensions: 275084
Number of successful extensions: 715
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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