Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0094.Seq
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    29   2.2  
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81496-13|CAB04075.1|  365|Caenorhabditis elegans Hypothetical p...    28   6.8  
AL031627-26|CAA20972.1|  365|Caenorhabditis elegans Hypothetical...    28   6.8  

>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 231 HLVLSGY-RARRHLQHKCR-HLPSDISSKVSAFTVQRLPHPSNRNALITASWQKWAADSQ 404
           H+  S Y  + + +QH  + H P   S    A T+Q  PHPS +    T    +    SQ
Sbjct: 86  HVESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPSTTTISSRQLYKSQ 145

Query: 405 EVLPP 419
            + PP
Sbjct: 146 LLYPP 150


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 500 PFISTVFYCKNWYIGTW-QDTNAPSSSYPLGH 592
           P+ +TV +C +WY   +  DTN   + +P+ +
Sbjct: 527 PYFATVIFCGSWYPAEFSDDTNFTPTLFPINY 558


>Z81496-13|CAB04075.1|  365|Caenorhabditis elegans Hypothetical
           protein Y102A5C.1 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 472 IAPRNKNQTRKIIICEITGGRTSCESAAHFC 380
           ++P+NKN  R+ ++ E   G+   E+   FC
Sbjct: 4   LSPKNKNDLRQCVLYEFIDGKPVFEAYKSFC 34


>AL031627-26|CAA20972.1|  365|Caenorhabditis elegans Hypothetical
           protein Y102A5C.1 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 472 IAPRNKNQTRKIIICEITGGRTSCESAAHFC 380
           ++P+NKN  R+ ++ E   G+   E+   FC
Sbjct: 4   LSPKNKNDLRQCVLYEFIDGKPVFEAYKSFC 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,317,173
Number of Sequences: 27780
Number of extensions: 258548
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)