Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0092.Seq
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    27   0.18 
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    27   0.18 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   1.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.9  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   6.9  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -2

Query: 491 TISTFHLRTATTKLTELESHVKATIIQFSIFASMSDSLKR*Y---SFSSFSRLTLVP 330
           T+ TF  R    K  ++ SHV  + I+          LKR Y   SF  FS L  VP
Sbjct: 106 TLFTFLARGTLIKSFDMLSHVDVSFIKAGFRLEYKQLLKRSYLIISFVLFSLLARVP 162


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -2

Query: 491 TISTFHLRTATTKLTELESHVKATIIQFSIFASMSDSLKR*Y---SFSSFSRLTLVP 330
           T+ TF  R    K  ++ SHV  + I+          LKR Y   SF  FS L  VP
Sbjct: 106 TLFTFLARGTLIKSFDMLSHVDVSFIKAGFRLEYKQLLKRSYLIISFVLFSLLARVP 162


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +2

Query: 170 ITKTAGGIVIPEKAQSKVLHGEVVAVGPEPEKKMETSSPFKLVWV 304
           I K     V+PE    +   G V     EPEKK E+       WV
Sbjct: 150 IRKCKPKTVVPEVGGVEEAKGPVDLSKSEPEKKTESQPMLWPAWV 194


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 137 EEEPIVLLHWPFRFL 93
           EE P V +  PFRFL
Sbjct: 485 EERPDVKIFLPFRFL 499


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 528 CNTCISYYNNNYWYKSVVYS 587
           CN   S+Y+   +Y  ++ S
Sbjct: 220 CNLTFSWYSKKVFYSKIIIS 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,473
Number of Sequences: 336
Number of extensions: 2768
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)