Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0092.Seq
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz...    56   6e-09
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   7.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.9  

>SPCC550.06c |hsp10||mitochondrial heat shock protein
           Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 104

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 24/46 (52%), Positives = 35/46 (76%)
 Frame = +2

Query: 113 AVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVG 250
           + K +VPLLDR+L++R +A TKTA GI +PEK+  K+  G V++VG
Sbjct: 7   SAKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVG 52



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/48 (41%), Positives = 32/48 (66%)
 Frame = +1

Query: 265 ENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 408
           + G      V+VGD+VLLP YGG+ + +   E+EY L+R+ ++LA I+
Sbjct: 58  KEGKLAQPSVAVGDRVLLPAYGGSNIKV--GEEEYSLYRDHELLAIIK 103


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 152 SGHGPEEEPIVLLHWPFRFLINRIQKRRI 66
           S + P+E  +  L WPF+ + + ++ R++
Sbjct: 7   SKNSPKEATVPELDWPFKLIKSHLETRKL 35


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 82  ILLIKNRNGQCSKTIGSSSGPC 147
           +L +KNRN Q    + S  GPC
Sbjct: 507 VLYLKNRNFQTGNEVMSILGPC 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,028
Number of Sequences: 5004
Number of extensions: 44388
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)