Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0092.Seq
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494...    54   1e-07
07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061     53   2e-07
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845...    51   1e-06
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341...    50   2e-06
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413     43   3e-04
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341...    32   0.36 
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194...    32   0.36 
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510...    29   3.4  

>06_01_0676 +
           4945361-4945531,4945632-4945811,4947145-4947300,
           4947460-4947537,4964041-4964214
          Length = 252

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 28/48 (58%), Positives = 33/48 (68%)
 Frame = +2

Query: 116 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPEP 259
           VK + PL DRVLIK AEA  KTAGG+++ E  + K   G VVAVGP P
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGLILTETTKEKPSIGTVVAVGPGP 203



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
 Frame = +2

Query: 125 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPE---PEKKMETS 280
           L PL DRVL+K   A  KT GGI++P  AQSK   GEVVAVG      +KK+E S
Sbjct: 61  LKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEGRTIGDKKVEVS 115


>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
          Length = 98

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 32/47 (68%)
 Frame = +1

Query: 265 ENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 405
           ++G  IPV +  GD VLLPEYGG +V L   EKEY LFRE DIL  +
Sbjct: 51  KDGKLIPVALKEGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/50 (44%), Positives = 36/50 (72%)
 Frame = +2

Query: 119 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPEPEKK 268
           +RL+P L+RVL+++     K+AGGI++PE ++ ++  G+VVAVGP    K
Sbjct: 3   RRLIPSLNRVLVEKLVQPKKSAGGILLPETSK-QLNSGKVVAVGPGERDK 51


>09_04_0259 -
           16182190-16182360,16183185-16183262,16184431-16184586,
           16184913-16185092,16185875-16186027
          Length = 245

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/48 (56%), Positives = 32/48 (66%)
 Frame = +2

Query: 116 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPEP 259
           VK L PL DRVLIK AEA  KTAGG+++ +  + K   G V AVGP P
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVTAVGPGP 197



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +2

Query: 131 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVG 250
           PL DRVL+K   +  KT GGI++P   QSK   G+VVAVG
Sbjct: 57  PLGDRVLVKIKTSDDKTVGGILLPTSVQSKPQGGQVVAVG 96



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +1

Query: 265 ENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 399
           E+G   P+ ++ G+ V+  +Y G++   + ++ EY + R SD++A
Sbjct: 200 EDGSRKPLSITPGNTVMYSKYAGSE--FKGEDGEYIVLRVSDVMA 242


>02_05_0964 -
           33133516-33133689,33133780-33133857,33133997-33134152,
           33134685-33134864,33135516-33135695
          Length = 255

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/42 (59%), Positives = 29/42 (69%)
 Frame = +2

Query: 125 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVG 250
           L PL DRVL+K   A  KT GGI++P  AQSK   GEVVA+G
Sbjct: 64  LKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIG 105



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/47 (55%), Positives = 31/47 (65%)
 Frame = +2

Query: 119 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPEP 259
           K + PL DRVLIK AEA  KT GG+++ E  + K   G VVAVGP P
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGP 206



 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 265 ENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 399
           E G  IP+ VS G  VL  +Y G++    +D   Y + R SD++A
Sbjct: 209 EEGKRIPLSVSAGSTVLYSKYAGSEFK-GSDGTSYIVLRVSDLMA 252


>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
          Length = 126

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/34 (61%), Positives = 24/34 (70%)
 Frame = +1

Query: 268 NGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEY 369
           +G  IPV +  GD VLLPEYGGT+V L   EKEY
Sbjct: 91  DGKLIPVSLKEGDTVLLPEYGGTEVKLA--EKEY 122



 Score = 35.5 bits (78), Expect = 0.039
 Identities = 14/31 (45%), Positives = 24/31 (77%)
 Frame = +2

Query: 113 AVKRLVPLLDRVLIKRAEAITKTAGGIVIPE 205
           A +RL+P ++RVL+++     K+AGGI++PE
Sbjct: 2   AARRLIPSMNRVLVEKLLQPNKSAGGILLPE 32


>10_08_0968 +
           21933627-21933785,21933893-21933943,21934094-21934129,
           21935011-21935076,21935163-21935210,21936424-21936453,
           21936651-21936719
          Length = 152

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 289 QVSVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 408
           +V  G KVL  +    +V L  DEK  H F RESD+LA +E
Sbjct: 114 EVEAGKKVLFSDINAYEVDLGTDEK--HCFCRESDLLAVVE 152


>02_05_0007 +
           24918163-24918420,24919360-24919410,24919411-24919480,
           24919645-24919830,24920127-24920275,24921310-24921417,
           24921501-24921638,24922574-24922853,24922924-24923047,
           24923197-24923312,24923612-24923619
          Length = 495

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -1

Query: 369 IFFLIIFKAYFSTAVFWKKNFITHTNLNGDEVSIFFSGSGPTATTSPCKTLD*AF--SGM 196
           + F ++F +Y      W  +   H   N  + S   +G+G    TS C T D AF  SGM
Sbjct: 375 VTFFLLFGSYLRVVYNWGSSSANHVGHNNLDSSENHAGAGLQRNTSDCDT-DAAFYWSGM 433

Query: 195 TMPPAVLVIASALL 154
            +  ++ +++  +L
Sbjct: 434 AILSSIALLSPTVL 447


>12_01_0618 -
           5099021-5099668,5099701-5100221,5100311-5100352,
           5100905-5100962
          Length = 422

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 94  KNRNGQCSKTIGSSSGPCP 150
           K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,408
Number of Sequences: 37544
Number of extensions: 262316
Number of successful extensions: 583
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)