Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0092.Seq
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084153-5|AAK84584.1| 108|Caenorhabditis elegans Hypothetical ... 57 1e-08
AF036705-10|AAB95167.2| 612|Caenorhabditis elegans Hypothetical... 29 2.3
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 29 3.0
U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z70034-14|CAC44294.1| 356|Caenorhabditis elegans Hypothetical p... 27 9.2
Z70034-13|CAC44293.1| 350|Caenorhabditis elegans Hypothetical p... 27 9.2
Z49910-11|CAC44292.1| 356|Caenorhabditis elegans Hypothetical p... 27 9.2
Z49910-10|CAC44291.1| 350|Caenorhabditis elegans Hypothetical p... 27 9.2
>AC084153-5|AAK84584.1| 108|Caenorhabditis elegans Hypothetical
protein Y22D7AL.10 protein.
Length = 108
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +2
Query: 107 ANAVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVG 250
+N +K PL DRVL++R A TKT GGI++PEK+Q KVL VV+ G
Sbjct: 10 SNVLKTFKPLYDRVLVERVAAETKTKGGIMLPEKSQGKVLEATVVSAG 57
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +1
Query: 265 ENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 396
E G+ + + V GD+VLLPEYGGTKV +E +KEY +FRESD+L
Sbjct: 63 EKGELVALTVKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104
>AF036705-10|AAB95167.2| 612|Caenorhabditis elegans Hypothetical
protein F37C4.1 protein.
Length = 612
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 405 NFRQ-YVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTNLNGDEVS 271
NF + Y+RLS I L++ + + V K + H N +G ++S
Sbjct: 288 NFEKWYLRLSSTSIGLLVVALFFINIVVINKDQILDHVNFSGKDIS 333
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 408 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 313
FN Y +S EM+ FLII ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463
>U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical
protein C56G2.1a protein.
Length = 867
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 134 LLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPEPEKKMETSSPFKL 295
+++ +K+ E K+A ++ ++ KVL E + P P K + +SP L
Sbjct: 294 VVEEQFVKKEEPKLKSAPTPLLTMPSKKKVLENEQIPEEPTPTKMNDATSPLSL 347
>Z70034-14|CAC44294.1| 356|Caenorhabditis elegans Hypothetical
protein C18E9.11b protein.
Length = 356
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 450 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 280
NRI T S+F F + +L E+++ + F Y+ST F + FI +N G
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220
Query: 279 EVS 271
E++
Sbjct: 221 EIA 223
>Z70034-13|CAC44293.1| 350|Caenorhabditis elegans Hypothetical
protein C18E9.11a protein.
Length = 350
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 450 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 280
NRI T S+F F + +L E+++ + F Y+ST F + FI +N G
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214
Query: 279 EVS 271
E++
Sbjct: 215 EIA 217
>Z49910-11|CAC44292.1| 356|Caenorhabditis elegans Hypothetical
protein C18E9.11b protein.
Length = 356
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 450 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 280
NRI T S+F F + +L E+++ + F Y+ST F + FI +N G
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220
Query: 279 EVS 271
E++
Sbjct: 221 EIA 223
>Z49910-10|CAC44291.1| 350|Caenorhabditis elegans Hypothetical
protein C18E9.11a protein.
Length = 350
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 450 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 280
NRI T S+F F + +L E+++ + F Y+ST F + FI +N G
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214
Query: 279 EVS 271
E++
Sbjct: 215 EIA 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,371,827
Number of Sequences: 27780
Number of extensions: 248786
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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