Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0092.Seq
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    25   0.50 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.1  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 525 SCNTCISYYNNNYWYKSVVYS 587
           SCN   +YYNNN  YK + Y+
Sbjct: 310 SCNYSNNYYNNNN-YKKLYYN 329


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +3

Query: 528 CNTCISYYNNNYWYKSVVYSKFLHCYIKMVHH 623
           C + I+Y ++ + Y  ++Y  F     ++ HH
Sbjct: 320 CGSAIAYVSDVFRYGLLIYDFFKDSSFRIQHH 351


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -1

Query: 156 LIRTRSRRGTNRFTALAISIFN*QNSKAKNMSTMNA 49
           +IR+RSRR + RF++  +   +  +S++ + S + +
Sbjct: 16  IIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTS 51


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 540 ISYYNNNYWYKSVVYSKFLHCYIKMVHHHVN 632
           IS  +NNY Y +  Y K      K +++++N
Sbjct: 82  ISSLSNNYNYNNNNYKKLYCNNYKKLYYNIN 112


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 540 ISYYNNNYWYKSVVYSKFLHCYIKMVHHHVN 632
           IS  +NNY Y +  Y K      K +++++N
Sbjct: 82  ISSLSNNYNYNNNNYKKLYCNNYKKLYYNIN 112


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 543 SYYNNNYWYKSVVYSKFLH 599
           +Y NNNY Y    Y+K L+
Sbjct: 323 NYNNNNYKYNYNNYNKKLY 341


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 76  F*ILLIKNRNGQCSKTIGSSSGPCP 150
           F  LL K RNG    T+ +++  CP
Sbjct: 289 FDCLLKKERNGPTQTTLNATTLFCP 313


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 76  F*ILLIKNRNGQCSKTIGSSSGPCP 150
           F  LL K RNG    T+ +++  CP
Sbjct: 379 FDCLLKKERNGPTQTTLNATTLFCP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,378
Number of Sequences: 438
Number of extensions: 3208
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)