Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0091.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.60 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.4  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   2.4  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   4.2  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    25   7.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.7  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   9.7  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 43  FVLFIAAAVSADDEPVLARLLVSKQVLNK 129
           F+LFI+ A+S    PVLAR+L    +L+K
Sbjct: 159 FLLFISTAMSITAFPVLARILSELHLLHK 187


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 176 LNNVYFTSISIFSTKYLFSTCF 111
           LN+  FTS+S+ S+KY F T F
Sbjct: 156 LNDACFTSLSMKSSKYSFLTAF 177


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 172 FNVGSAPAVEVKLVDNGFHPDV 237
           FNVG +  V V L D  FH DV
Sbjct: 86  FNVGISVIVRVTLKDGSFHEDV 107


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 303  HVVTVRSNKYGYFNFSXAEV-TYKASEDATDVQYSISSAPGEGAIVAF-KDYDRKFSSHI 476
            H   +R ++   FN++   + TY ASE+  +++Y      G G  + F     ++F+ + 
Sbjct: 1274 HRQKIRISRKKIFNYALHLLATYAASENILEIEYEDEVGSGLGPTLEFYTSVSKEFTLNS 1333

Query: 477  LD 482
            LD
Sbjct: 1334 LD 1335


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 257 LPPTTVNTSGWKPLSTSF 204
           LP TT+N   ++PL +SF
Sbjct: 320 LPATTINRENFQPLKSSF 337


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 55   IAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKY 165
            IAA++  +D P + RL   +  +N Y++++    + Y
Sbjct: 1989 IAASLKGEDIPSIQRLYCYEGPINNYMIKSWGSRLSY 2025


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 337 ISTSAXRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKI 450
           +     RK  TK     +  +I SAVL E +P   SK+
Sbjct: 132 VGKEVQRKLRTKQLDLSKAESIISAVLGEEKPDPSSKV 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,407
Number of Sequences: 5004
Number of extensions: 42100
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)