Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0091.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 34 0.065
10_01_0105 + 1287423-1289924 32 0.26
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 31 0.46
10_08_0333 - 16850267-16851802 30 1.1
05_05_0266 - 23694466-23696787,23696885-23697187 29 1.8
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 29 1.8
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836... 29 2.4
04_03_0521 + 16765347-16767324,16769202-16769392 29 3.2
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 29 3.2
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855... 28 4.3
10_01_0071 - 905696-909028 28 5.6
04_04_0442 - 25229186-25229568,25229740-25232671 28 5.6
03_06_0374 + 33472391-33472516,33473162-33473365,33473510-334737... 28 5.6
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 28 5.6
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708... 28 5.6
08_02_0238 + 14665813-14668798,14669088-14669125 27 7.5
06_03_0274 + 19073634-19073743,19073818-19074013,19074473-19074715 27 7.5
03_02_0686 + 10407800-10409501,10409611-10410284 27 7.5
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 9.9
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 27 9.9
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 34.3 bits (75), Expect = 0.065
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = +1
Query: 16 LRMAAKLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPA 195
+ MA +L +L AAA ++ D P L K VE + V L+N GSA A
Sbjct: 1 MAMARSILLLLLLAAAASASADAPFLVAHKKVSLSRPKPGVERL--AVSLDLYNQGSATA 58
Query: 196 VEVKLVDNGFHPDVFTVVGG 255
+V + D+ + + F +V G
Sbjct: 59 YDVSINDDTWPKEAFELVSG 78
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +3
Query: 255 QLTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSAPGEGAI 434
+++ ++R+ P SH + + G F S A +TY+ A +Q + S+ +
Sbjct: 79 EMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAA-LQEAYSTPILALDV 137
Query: 435 VAFKDYDRKF 464
+A + ++KF
Sbjct: 138 LAERPPEKKF 147
>10_01_0105 + 1287423-1289924
Length = 833
Score = 32.3 bits (70), Expect = 0.26
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -1
Query: 296 VSLRCNPIDFXGQLPPTTVNTSGWKPLSTSFTSTAGALP----TLNNVYFTSIS 147
+ L + I F G LPP N + + L SFTS +G LP L+N+ + +S
Sbjct: 136 IHLDLSYIPFSGTLPPLLSNLTNLEYLDLSFTSFSGTLPPQLGNLSNLRYLDVS 189
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 31.5 bits (68), Expect = 0.46
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Frame = -1
Query: 479 EDMRGELSIIIFEGYDGSLSWSTADRILDVCGVFAGFVCDFRXAEVEIAV----LIGPD- 315
ED L + +DG L+ S + D C + G VCD E+++ L G
Sbjct: 108 EDRSSLLRFLAGLSHDGGLAASWRPDV-DCCHAWEGVVCDDEGTVTEVSLQSRGLHGSIS 166
Query: 314 -SHYMGYVSL-RCNPID--FXGQLPPTTVNTSGWKPLSTSFTSTAGALPTL 174
S G SL R N G LPP + ++ L SF S G LP L
Sbjct: 167 LSSLAGLTSLTRLNLSHNALSGSLPPELMYSASLVVLDVSFNSLDGVLPPL 217
>10_08_0333 - 16850267-16851802
Length = 511
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 293 SLRCNPIDFXGQLPPTTVNTSGWKPLSTSFTSTAGALPTLNNVY-FTSISIFS 138
SL + + G +PP+ S L+ S+ +G +PT N + FT SI+S
Sbjct: 365 SLDLSSNEISGAIPPSLAGISTLSTLNLSYNHLSGKIPTGNQLQTFTDPSIYS 417
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 43 FVLFIAAAVSADDEPVLARLLVSKQVLNKYL 135
F+LF+ A+S PVLAR+L ++LN L
Sbjct: 196 FLLFLGVALSVTAFPVLARILAEVKLLNSDL 226
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 34 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 213
LL +L AA + D P + + K L++ + V L+N GSA A +V L
Sbjct: 11 LLLLLLVPFAAAAGQDAPFV--VAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLN 68
Query: 214 DNGFHPDVFTVVGG 255
D+ + + F ++ G
Sbjct: 69 DDSWPQEAFQLISG 82
>01_06_1133 +
34781799-34782071,34782168-34783166,34783252-34783663,
34783727-34784670
Length = 875
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 43 FVLFIAAAVSADDEPVLARLLVSKQVLNKYL 135
F+LF+ A+S PVLAR+L ++LN L
Sbjct: 186 FLLFLGVALSVTAFPVLARILAEIKLLNTEL 216
>04_03_0521 + 16765347-16767324,16769202-16769392
Length = 722
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 103 LVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVDNGFHPDVFT 243
++ + VL K L+ N I + + A ++ K+VD+G PD+FT
Sbjct: 74 MMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFT 120
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 34 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNK 129
+ +++L A +S D PV+ARL+ K V+ K
Sbjct: 264 ITFYLLMKAEGLSVQDHPVIARLVEIKSVVEK 295
>01_06_1664 -
38984545-38984615,38984706-38984802,38985362-38985523,
38985736-38985825,38986125-38986226,38986373-38986446,
38986587-38986615,38986766-38986989
Length = 282
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 195 C*SETRGQRLPSGRVYCSRWQLTXEIDRIAPQTNVSHVVTVRSNKYGY 338
C + T S + YC R+ D I + ++TV S YGY
Sbjct: 231 CLTTTATNENVSKKKYCPRYITLPTYDPIVHANSTREIITVESEVYGY 278
>10_01_0071 - 905696-909028
Length = 1110
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 269 FXGQLPPTTVNTSGWKPLSTSFTSTAGALP 180
F G +PP+ +G L+ S+ AGA+P
Sbjct: 196 FTGAIPPSLSGCAGLTTLNLSYNGLAGAIP 225
>04_04_0442 - 25229186-25229568,25229740-25232671
Length = 1104
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 263 GQLPPTTVNTSGWKPLSTSFTSTAGALPTL 174
G++P T N S + S+ + GALPT+
Sbjct: 666 GEIPDTFANLSSLLEFNVSYNNLTGALPTI 695
>03_06_0374 +
33472391-33472516,33473162-33473365,33473510-33473706,
33473813-33473942,33474085-33474174
Length = 248
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/84 (17%), Positives = 40/84 (47%)
Frame = +3
Query: 237 VYCSRWQLTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSA 416
++ SR+++ +D+I P+ + Y + +T ++ Y +S+
Sbjct: 73 IWASRYKVGGWLDKILPRWFYHMTSNTILDSDTYLHVEDRNITTVGLDNWHKACYVPTSS 132
Query: 417 PGEGAIVAFKDYDRKFSSHILDWA 488
+ ++A++++ RK+ +H + WA
Sbjct: 133 --DNLVIAYRNWFRKYCNHQIGWA 154
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 341 EIAVLIGPDSHYMGYVSLRCNPIDFXGQLPPTTVNTSGWKPLSTSFTSTAGALPT 177
++ IGP SH R DF PP+ NTS P + T+ +G PT
Sbjct: 23 KLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQPPKDS--TARSGRRPT 75
>01_01_0898 +
7078900-7079079,7080269-7080301,7080480-7080653,
7080866-7083890,7084253-7084596
Length = 1251
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 299 YVSLRCNPIDFXGQLPPTTVNTSGWKPLSTSFTSTAGALPTLNNVYF 159
Y++LR N + G +PP N S + L S + G +PT +N F
Sbjct: 391 YLNLRGNRL--AGAVPPAVYNMSRLRGLVLSHNNLTGWIPTTSNGSF 435
>08_02_0238 + 14665813-14668798,14669088-14669125
Length = 1007
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 263 GQLPPTTVNTSGWKPLSTSFTSTAGALP-TLNNVYFTSISIFSTK 132
GQ+PP S L+ S S +G++P TL++ Y I + S K
Sbjct: 132 GQIPPELGQLSRLGYLNLSSNSLSGSIPNTLSSTYLEVIDLESNK 176
>06_03_0274 + 19073634-19073743,19073818-19074013,19074473-19074715
Length = 182
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 263 GQLPPTTVNTSGWKPLSTSFTSTAGALPTL 174
G LPPT + T +PL T+ S G++P+L
Sbjct: 147 GILPPTNLVTDDDEPLPTAPRSCNGSMPSL 176
>03_02_0686 + 10407800-10409501,10409611-10410284
Length = 791
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 296 VSLRCNPIDFXGQLPPTTVNTSGWKPLSTSFTSTAGALP 180
VSL+ + + G++PPT N LS S+ +G++P
Sbjct: 184 VSLQLSSNNLSGEVPPTIGNLRMLHELSLSYNLISGSIP 222
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 321 TGQSLHGIR*FEVQSYRFPRSVATYYSKHVRMEAVVHEFHFNS 193
T Q R + QS+RF R T++ +HV + E+ S
Sbjct: 766 TYQQFLSARELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGS 808
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 263 GQLPPTTVNTSGWKPLSTSFTSTAGALPTLNNVYFTSISIFSTKY 129
G +P + N G K L S + +GA+P FTS+ + Y
Sbjct: 617 GSIPQSLANLRGTKVLDFSANNLSGAIPDFFGT-FTSLQYLNMSY 660
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,649
Number of Sequences: 37544
Number of extensions: 285972
Number of successful extensions: 808
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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