Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0091.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                29   3.3  
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    28   4.4  
SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 220  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 128
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1437 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1467



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 220  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 128
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1459 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1489



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 220  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 128
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1481 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1511



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 220  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 128
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1503 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1533



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 220  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 128
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1525 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1555



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 220  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 128
            R P   L  P+RS + T+ + L YPY LL I
Sbjct: 1591 RYPYALLTVPLRSTYDTLTLYLRYPYPLLTI 1621



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 220  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 128
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1547 RYPYALLTIPLRSTYDTLTLNLRYPYALLTI 1577



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 220  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 128
            R P   L  P+RS + T+ + L YPY+LL +
Sbjct: 1569 RYPYALLTIPLRSTYGTLQLYLRYPYALLTV 1599


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 349 AXRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRISSIGRHSQL*PSVPSH 522
           A  ++ T PA+ P  S+  +  +Q+R P+ P+K    SS     + + +   P+   H
Sbjct: 106 AQPRNPTSPAEKPHQSSKETQPVQQRNPAGPAKKPSRSSKETQPVQQRNPASPAKKHH 163


>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = -1

Query: 410 ADRILDVCGVFAGFVCDFRXAEVEIAVLIGPDSHYMGYVSLRCNPIDFXGQLPPTTVNTS 231
           ADR LD C    G++ +     + I V++   S   GY++L C   D    L P  V   
Sbjct: 246 ADRHLDRCRS-VGYIIESWLVAIVITVVLWTKSSSWGYIALACKK-DAC-VLLPLAVQGQ 302

Query: 230 GWKPLSTSFTSTAG 189
            ++P +T  T   G
Sbjct: 303 CYQPANTKETPLPG 316


>SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 497 CECRPIEDMRGELSIIIFEGYDGS---LSWSTADRILDVCGVF 378
           C+ RP+  M    S+++ E Y G+   L+  TAD ++D C  F
Sbjct: 255 CKERPVPSMT---SVLVKESYTGAHQLLTQGTADVVIDTCSDF 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,112,257
Number of Sequences: 59808
Number of extensions: 337661
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)