Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0091.Seq
(548 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74104-1|CAA52207.1| 183|Homo sapiens translocon-associated pro... 98 2e-20
D37991-1|BAA07206.1| 183|Homo sapiens beta-signal sequence rece... 98 2e-20
CR456973-1|CAG33254.1| 183|Homo sapiens SSR2 protein. 98 2e-20
BC000341-1|AAH00341.2| 183|Homo sapiens signal sequence recepto... 98 2e-20
AL355388-11|CAH72631.1| 202|Homo sapiens signal sequence recept... 98 2e-20
AK222600-1|BAD96320.1| 183|Homo sapiens signal sequence recepto... 98 2e-20
BX649192-1|CAE46211.1| 143|Homo sapiens hypothetical protein pr... 66 6e-11
AL355388-12|CAH72632.1| 146|Homo sapiens signal sequence recept... 66 6e-11
>X74104-1|CAA52207.1| 183|Homo sapiens translocon-associated
protein protein.
Length = 183
Score = 97.9 bits (233), Expect = 2e-20
Identities = 48/84 (57%), Positives = 60/84 (71%)
Frame = +3
Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSAPGEGAIV 437
L + DRIAP +NVSH V +R K GYFNF+ A +TY A ED V S +SAPG+G I+
Sbjct: 76 LNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGS-TSAPGQGGIL 134
Query: 438 AFKDYDRKFSSHILDWAAFAVMTL 509
A +++DR+FS H LDWAAF VMTL
Sbjct: 135 AQREFDRRFSPHFLDWAAFGVMTL 158
Score = 66.5 bits (155), Expect = 6e-11
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 31 KLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKL 210
+LL FV+ AV+ +E ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+L
Sbjct: 2 RLLSFVVLALFAVTQAEEG--ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 211 VDNGFHPDVFTVVGG 255
D+ F P+ F +V G
Sbjct: 60 SDDSFPPEDFGIVSG 74
>D37991-1|BAA07206.1| 183|Homo sapiens beta-signal sequence
receptor protein.
Length = 183
Score = 97.9 bits (233), Expect = 2e-20
Identities = 48/84 (57%), Positives = 60/84 (71%)
Frame = +3
Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSAPGEGAIV 437
L + DRIAP +NVSH V +R K GYFNF+ A +TY A ED V S +SAPG+G I+
Sbjct: 76 LNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGS-TSAPGQGGIL 134
Query: 438 AFKDYDRKFSSHILDWAAFAVMTL 509
A +++DR+FS H LDWAAF VMTL
Sbjct: 135 AQREFDRRFSPHFLDWAAFGVMTL 158
Score = 66.5 bits (155), Expect = 6e-11
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 31 KLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKL 210
+LL FV+ AV+ +E ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+L
Sbjct: 2 RLLSFVVLALFAVTQAEEG--ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 211 VDNGFHPDVFTVVGG 255
D+ F P+ F +V G
Sbjct: 60 SDDSFPPEDFGIVSG 74
>CR456973-1|CAG33254.1| 183|Homo sapiens SSR2 protein.
Length = 183
Score = 97.9 bits (233), Expect = 2e-20
Identities = 48/84 (57%), Positives = 60/84 (71%)
Frame = +3
Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSAPGEGAIV 437
L + DRIAP +NVSH V +R K GYFNF+ A +TY A ED V S +SAPG+G I+
Sbjct: 76 LNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGS-TSAPGQGGIL 134
Query: 438 AFKDYDRKFSSHILDWAAFAVMTL 509
A +++DR+FS H LDWAAF VMTL
Sbjct: 135 AQREFDRRFSPHFLDWAAFGVMTL 158
Score = 66.5 bits (155), Expect = 6e-11
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 31 KLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKL 210
+LL FV+ AV+ +E ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+L
Sbjct: 2 RLLSFVVLALFAVTQAEEG--ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 211 VDNGFHPDVFTVVGG 255
D+ F P+ F +V G
Sbjct: 60 SDDSFPPEDFGIVSG 74
>BC000341-1|AAH00341.2| 183|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 183
Score = 97.9 bits (233), Expect = 2e-20
Identities = 48/84 (57%), Positives = 60/84 (71%)
Frame = +3
Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSAPGEGAIV 437
L + DRIAP +NVSH V +R K GYFNF+ A +TY A ED V S +SAPG+G I+
Sbjct: 76 LNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGS-TSAPGQGGIL 134
Query: 438 AFKDYDRKFSSHILDWAAFAVMTL 509
A +++DR+FS H LDWAAF VMTL
Sbjct: 135 AQREFDRRFSPHFLDWAAFGVMTL 158
Score = 66.5 bits (155), Expect = 6e-11
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 31 KLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKL 210
+LL FV+ AV+ +E ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+L
Sbjct: 2 RLLSFVVLALFAVTQAEEG--ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 211 VDNGFHPDVFTVVGG 255
D+ F P+ F +V G
Sbjct: 60 SDDSFPPEDFGIVSG 74
>AL355388-11|CAH72631.1| 202|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 202
Score = 97.9 bits (233), Expect = 2e-20
Identities = 48/84 (57%), Positives = 60/84 (71%)
Frame = +3
Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSAPGEGAIV 437
L + DRIAP +NVSH V +R K GYFNF+ A +TY A ED V S +SAPG+G I+
Sbjct: 95 LNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGS-TSAPGQGGIL 153
Query: 438 AFKDYDRKFSSHILDWAAFAVMTL 509
A +++DR+FS H LDWAAF VMTL
Sbjct: 154 AQREFDRRFSPHFLDWAAFGVMTL 177
Score = 66.5 bits (155), Expect = 6e-11
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 31 KLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKL 210
+LL FV+ AV+ +E ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+L
Sbjct: 21 RLLSFVVLALFAVTQAEEG--ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 78
Query: 211 VDNGFHPDVFTVVGG 255
D+ F P+ F +V G
Sbjct: 79 SDDSFPPEDFGIVSG 93
>AK222600-1|BAD96320.1| 183|Homo sapiens signal sequence receptor,
beta precursor variant protein.
Length = 183
Score = 97.9 bits (233), Expect = 2e-20
Identities = 48/84 (57%), Positives = 60/84 (71%)
Frame = +3
Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSAPGEGAIV 437
L + DRIAP +NVSH V +R K GYFNF+ A +TY A ED V S +SAPG+G I+
Sbjct: 76 LNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGS-TSAPGQGGIL 134
Query: 438 AFKDYDRKFSSHILDWAAFAVMTL 509
A +++DR+FS H LDWAAF VMTL
Sbjct: 135 AQREFDRRFSPHFLDWAAFGVMTL 158
Score = 65.3 bits (152), Expect = 1e-10
Identities = 33/75 (44%), Positives = 50/75 (66%)
Frame = +1
Query: 31 KLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKL 210
+LL FV+ AV+ +E ARLL SK +LN+Y VE D+ ++Y +NVGS+ A++V+L
Sbjct: 2 RLLSFVVLALFAVTQAEEG--ARLLASKSLLNRYAVEGRDLTLQYNTYNVGSSAALDVEL 59
Query: 211 VDNGFHPDVFTVVGG 255
D+ F P+ F +V G
Sbjct: 60 SDDSFPPEDFGIVSG 74
>BX649192-1|CAE46211.1| 143|Homo sapiens hypothetical protein
protein.
Length = 143
Score = 66.5 bits (155), Expect = 6e-11
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 31 KLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKL 210
+LL FV+ AV+ +E ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+L
Sbjct: 23 RLLSFVVLALFAVTQAEEG--ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 80
Query: 211 VDNGFHPDVFTVVGG 255
D+ F P+ F +V G
Sbjct: 81 SDDSFPPEDFGIVSG 95
Score = 52.4 bits (120), Expect = 1e-06
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +3
Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASED 383
L + DRIAP +NVSH V +R K GYFNF+ A +TY A ED
Sbjct: 97 LNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQED 138
>AL355388-12|CAH72632.1| 146|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 146
Score = 66.5 bits (155), Expect = 6e-11
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 31 KLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKL 210
+LL FV+ AV+ +E ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+L
Sbjct: 21 RLLSFVVLALFAVTQAEEG--ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 78
Query: 211 VDNGFHPDVFTVVGG 255
D+ F P+ F +V G
Sbjct: 79 SDDSFPPEDFGIVSG 93
Score = 52.4 bits (120), Expect = 1e-06
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +3
Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASED 383
L + DRIAP +NVSH V +R K GYFNF+ A +TY A ED
Sbjct: 95 LNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQED 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,311,522
Number of Sequences: 237096
Number of extensions: 1588096
Number of successful extensions: 3019
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3013
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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