Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0091.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...    54   7e-08
Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical pr...    42   3e-04
DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    27   6.7  
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    27   6.7  
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    27   6.7  
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       27   6.7  
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/70 (34%), Positives = 43/70 (61%)
 Frame = +3

Query: 258 LTXEIDRIAPQTNVSHVVTVRSNKYGYFNFSXAEVTYKASEDATDVQYSISSAPGEGAIV 437
           L    ++I   +NV+H V +R   +G+FN++ A+VTY    +   V  ++++ PGEG I 
Sbjct: 81  LFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTYYTDNENHHV--TLTNTPGEGYIY 138

Query: 438 AFKDYDRKFS 467
             ++YDR+F+
Sbjct: 139 RQREYDRRFA 148



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  LYFVLFIAAA-VSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 213
           L+ +LF+  + V    +   A +L  KQ L+ Y VENMD +++Y L+NVG  PA +V + 
Sbjct: 5   LFALLFVVVSCVDVGTQTRDAFILAHKQPLSTYAVENMDFVLEYGLYNVGDKPAQKVTID 64

Query: 214 D-NGFHPDVFTVVGG 255
           D + F  + F +V G
Sbjct: 65  DRHSFPTNSFDIVKG 79


>Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical
           protein K08F4.3 protein.
          Length = 182

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +1

Query: 37  LYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVD 216
           +  V  I +A++A D    A++L+ K  + KY V   +   +Y + N+G +PA++V+L D
Sbjct: 1   MQLVFLILSALAAADAS--AKILIGKSFVTKYPVAQRENAFEYQIINIGLSPALKVELSD 58

Query: 217 -NGFHPDVFTVVGGN 258
              F  D F ++ G+
Sbjct: 59  LKSFPTDRFEILKGS 73


>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 240 YCSRWQLTXEIDRIAPQTNVSHVVTVRSNKYGYFN 344
           +C+ W +  E+ +  P    +H +T   +K G F+
Sbjct: 420 FCNLWSIRNEVQKQHPSLESAHKITQLMSKIGIFS 454


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 240 YCSRWQLTXEIDRIAPQTNVSHVVTVRSNKYGYFN 344
           +C+ W +  E+ +  P    +H +T   +K G F+
Sbjct: 420 FCNLWSIRNEVQKQHPSLESAHKITQLMSKIGIFS 454


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 240 YCSRWQLTXEIDRIAPQTNVSHVVTVRSNKYGYFN 344
           +C+ W +  E+ +  P    +H +T   +K G F+
Sbjct: 420 FCNLWSIRNEVQKQHPSLESAHKITQLMSKIGIFS 454


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 240 YCSRWQLTXEIDRIAPQTNVSHVVTVRSNKYGYFN 344
           +C+ W +  E+ +  P    +H +T   +K G F+
Sbjct: 420 FCNLWSIRNEVQKQHPSLESAHKITQLMSKIGIFS 454


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
           protein Y37B11A.2 protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 436 TMAPSPGALLIEYWTSVASSLAL 368
           T+AP  G LL+  W  V S LAL
Sbjct: 478 TVAPPKGRLLVSVWKVVRSDLAL 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,110
Number of Sequences: 27780
Number of extensions: 244089
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)