Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0091.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   4.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   4.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.2  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 165 HIVQCWERTGC*SETRGQRLPSGRVYCSRWQLTXEIDRIAP 287
           H V+     G  SE R  +LP   V C  ++    I+ + P
Sbjct: 293 HYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIENVIP 333


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 165 HIVQCWERTGC*SETRGQRLPSGRVYCSRWQLTXEIDRIAP 287
           H V+     G  SE R  +LP   V C  ++    I+ + P
Sbjct: 308 HYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIENVIP 348


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 209 SFTSTAGALPTLNNVYFTSISI 144
           S TSTAG  PT      TS+SI
Sbjct: 721 SRTSTAGQFPTNVATTVTSMSI 742


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,337
Number of Sequences: 438
Number of extensions: 2964
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)