Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0090.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                121   4e-28
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           45   3e-05
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            39   0.003
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    29   2.1  
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 29   2.8  
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   28   3.7  
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   27   6.5  
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 27   8.6  
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)                 27   8.6  
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)           27   8.6  
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               27   8.6  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    27   8.6  
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)         27   8.6  
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)                  27   8.6  
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  121 bits (291), Expect = 4e-28
 Identities = 55/77 (71%), Positives = 66/77 (85%)
 Frame = -2

Query: 492 EKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG 313
           EK+ RR+GK  E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVG
Sbjct: 236 EKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVG 295

Query: 312 VIKAVNFKEAGGGKVTK 262
           VIK+V+  EA GGK TK
Sbjct: 296 VIKSVDKTEAAGGKTTK 312


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 486 VXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRD 337
           + ++TGK  +  P+ IK    AI  L     +C+E F +F  +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = -2

Query: 423 AIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 307
           A V L  S+P+CVE ++++  LGRF +R    T+A GVI
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 59  FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 199
           +QI+Y+  Y   KI +H++  K  RK + L  FFPS  H +    +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 296 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 394
           LT+L  PT    L  RT  +PR G  W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441


>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 903

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           +VP++P CV SF EF  +    +RD+ Q
Sbjct: 382 VVPAQPQCVASFPEFCAVSVSYIRDLSQ 409


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 311 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 406
           TP+  VCL+SR  + PR    W     R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 221 VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 60
           V++ +    A++  P  V K+KR   SFL    Y    V +F ++ +V+H ++E
Sbjct: 3   VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54


>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 904

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           ++P++P CV SF EF  +    +RD+ Q
Sbjct: 383 VMPAQPQCVASFPEFCAVSVSYIRDLLQ 410


>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
          Length = 1175

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           + P++P CV SF EF  +    +RD+ Q
Sbjct: 387 VTPAQPQCVASFPEFSAVSVSYIRDILQ 414


>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
          Length = 549

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           + P++P CV SF EF  +    +RD+ Q
Sbjct: 391 VTPAQPQCVASFPEFSAVSVSYIRDILQ 418


>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 1131

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411  LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
            + P++P CV SF EF  +    +RD+ Q
Sbjct: 1046 VTPAQPQCVASFPEFSAVSVSYIRDILQ 1073


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 406  TFQASMCRVLPGIPTPRSFCCP*HEADS 323
            T +    R LPGI  P   CC  H  DS
Sbjct: 2446 TEETEEMRTLPGIANPEGPCCVNHTMDS 2473


>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           + P++P CV SF EF  +    +RD+ Q
Sbjct: 534 VTPAQPQCVASFPEFSAVSVSYIRDILQ 561


>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
          Length = 1285

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411  LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
            + P++P CV SF EF  +    +RD+ Q
Sbjct: 1113 VTPAQPQCVASFPEFSAVSVSYIRDILQ 1140


>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
          Length = 605

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           + P++P CV SF EF  +    +RD+ Q
Sbjct: 186 VTPAQPQCVASFPEFSAVSVSYIRDILQ 213


>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           + P++P CV SF EF  +    +RD+ Q
Sbjct: 5   VTPAQPQCVASFPEFSAVSVSYIRDILQ 32


>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           + P++P CV SF EF  +    +RD+ Q
Sbjct: 89  VTPAQPQCVASFPEFSAVSVSYIRDILQ 116


>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           + P++P CV SF EF  +    +RD+ Q
Sbjct: 5   VTPAQPQCVASFPEFSAVSVSYIRDILQ 32


>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 411 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 328
           + P++P CV SF EF  +    +RD+ Q
Sbjct: 5   VTPAQPQCVASFPEFSAVSVSYIRDILQ 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,239
Number of Sequences: 59808
Number of extensions: 239759
Number of successful extensions: 621
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)