Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0090.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   116   1e-26
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   116   1e-26
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   116   1e-26
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    46   1e-05
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    35   0.029
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    35   0.029
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   1.9  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   7.6  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    27   10.0 
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   10.0 

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  116 bits (278), Expect = 1e-26
 Identities = 55/79 (69%), Positives = 63/79 (79%)
 Frame = -2

Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
           +KEKV RRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVA
Sbjct: 341 LKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVA 400

Query: 318 VGVIKAVNFKEAGGGKVTK 262
           VGVIK+V   +   GKVTK
Sbjct: 401 VGVIKSVEKSDGSSGKVTK 419


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  116 bits (278), Expect = 1e-26
 Identities = 55/79 (69%), Positives = 63/79 (79%)
 Frame = -2

Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
           +KEKV RRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVA
Sbjct: 375 LKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVA 434

Query: 318 VGVIKAVNFKEAGGGKVTK 262
           VGVIK+V   +   GKVTK
Sbjct: 435 VGVIKSVEKSDGSSGKVTK 453


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  116 bits (278), Expect = 1e-26
 Identities = 55/79 (69%), Positives = 63/79 (79%)
 Frame = -2

Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
           +KEKV RRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVA
Sbjct: 375 LKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVA 434

Query: 318 VGVIKAVNFKEAGGGKVTK 262
           VGVIK+V   +   GKVTK
Sbjct: 435 VGVIKSVEKSDGSSGKVTK 453


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = -2

Query: 486 VXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 310
           + ++TG+      K +K  +  I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527

Query: 309 IKAV 298
           +K V
Sbjct: 528 LKVV 531


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -2

Query: 486 VXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 307
           + +  G+  +  P+ I  G +A+V +     + +E+F     LGR   R    T+A G++
Sbjct: 526 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 585

Query: 306 KAV 298
           + V
Sbjct: 586 EKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -2

Query: 486 VXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 307
           + +  G+  +  P+ I  G +A+V +     + +E+F     LGR   R    T+A G++
Sbjct: 544 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 603

Query: 306 KAV 298
           + V
Sbjct: 604 EKV 606


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 158 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 51
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 296 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 397
           + AL  P T ++CL +   K P  GN+  D T RG
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 203 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 87
           H TA L S K V+  K+    F+ +  ++ C+  LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 229 LELLTAQFFIQLRYFIHRKVFRRKKGLQTHSFSIFFT 119
           + L+ A + + L +FI+R +      L TH F  + T
Sbjct: 96  ISLVAASYAVLLTHFIYRYLVIHNSSLATHKFHWYLT 132


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 98  FYNLYKVIHNISETFCYDC 42
           F +L K++ N   TFCY C
Sbjct: 44  FQHLPKLLENCGHTFCYSC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,145,887
Number of Sequences: 27780
Number of extensions: 189663
Number of successful extensions: 494
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)