Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0090.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 106 9e-24
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 106 9e-24
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 106 9e-24
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 106 9e-24
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 89 2e-18
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 48 3e-06
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 44 6e-05
At4g27900.2 68417.m04005 expressed protein 31 0.43
At4g27900.1 68417.m04004 expressed protein 31 0.43
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 2.3
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 4.0
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 7.0
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 27 7.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 106 bits (254), Expect = 9e-24
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = -2
Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
I K+ RR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVA
Sbjct: 363 ILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVA 422
Query: 318 VGVIKAVNFKEAGGGKVTK 262
VGVIK+V+ K+ G KVTK
Sbjct: 423 VGVIKSVDKKDPTGAKVTK 441
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 106 bits (254), Expect = 9e-24
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = -2
Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
I K+ RR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVA
Sbjct: 363 ILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVA 422
Query: 318 VGVIKAVNFKEAGGGKVTK 262
VGVIK+V+ K+ G KVTK
Sbjct: 423 VGVIKSVDKKDPTGAKVTK 441
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 106 bits (254), Expect = 9e-24
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = -2
Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
I K+ RR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVA
Sbjct: 363 ILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVA 422
Query: 318 VGVIKAVNFKEAGGGKVTK 262
VGVIK+V+ K+ G KVTK
Sbjct: 423 VGVIKSVDKKDPTGAKVTK 441
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 106 bits (254), Expect = 9e-24
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = -2
Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
I K+ RR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVA
Sbjct: 363 ILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVA 422
Query: 318 VGVIKAVNFKEAGGGKVTK 262
VGVIK+V+ K+ G KVTK
Sbjct: 423 VGVIKSVDKKDPTGAKVTK 441
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 88.6 bits (210), Expect = 2e-18
Identities = 40/76 (52%), Positives = 54/76 (71%)
Frame = -2
Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
I K+ RTG E PK +K+ +AAI+ + P+KP+ VE++ +PPLGRFA+RDMRQTV
Sbjct: 29 ILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVG 88
Query: 318 VGVIKAVNFKEAGGGK 271
VGVIK+V K+ G K
Sbjct: 89 VGVIKSVVKKDPSGAK 104
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = -2
Query: 498 IKEKVXRRTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 319
+K ++ +T K + +K+G A + + + +C+E F +FP LGRF +R +T+A
Sbjct: 459 LKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIA 518
Query: 318 VGVI 307
VG +
Sbjct: 519 VGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 44.0 bits (99), Expect = 6e-05
Identities = 19/60 (31%), Positives = 37/60 (61%)
Frame = -2
Query: 477 RTGKSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 298
+TG+ T+ +P+ + + +A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 604 KTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.1 bits (67), Expect = 0.43
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 450 PKSIKSGDAAIVXLVPSKPLCVESFQEFPPL 358
PKS+ SG+ + + +V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.1 bits (67), Expect = 0.43
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 450 PKSIKSGDAAIVXLVPSKPLCVESFQEFPPL 358
PKS+ SG+ + + +V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -3
Query: 128 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 30
I+ K C+ V LFY ++ N S FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -3
Query: 128 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 30
I+ K C+ V L+Y ++ N S FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -2
Query: 468 KSTEVNPKSIKSGDAAIVXLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 295
K+++ +P GD+ IV P KPL + S ++ PP+ + T + ++ VN
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPIQNNEAK-TEDTPVLSTVQPVN 501
>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 495
Score = 27.1 bits (57), Expect = 7.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 74 HNISETFCYDCKLKCKF 24
+ ++ FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,563,002
Number of Sequences: 28952
Number of extensions: 172475
Number of successful extensions: 446
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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