Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0089.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           26   0.16 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   4.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   5.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.9  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.8  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +2

Query: 71  PGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGD 247
           P D   +P P   +P A  P P  S      +  +P   T    +G   A+P +P+  D
Sbjct: 73  PSDGTTSPEPDPEIPVAPEPAPLAS-----PLVQEPGSSTTSATSGAVMASPPMPITTD 126


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 74   GDTVRAPHPGRHVPRAHAPHPGQS 145
            G + R   P  H   A AP PGQ+
Sbjct: 1644 GQSFRLEKPENHGLNAKAPGPGQA 1667



 Score = 21.0 bits (42), Expect = 4.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 145  TLPWMRSMRPGYMPP 101
            T  W +  +P Y PP
Sbjct: 1163 TSSWQKPTKPSYRPP 1177


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 83  VRAPHPGRHVPRAH 124
           ++ P P +H PR H
Sbjct: 98  LQEPQPSQHCPRKH 111


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 77  DTVRAPHPGRHVPRAHAPHPG 139
           DT+  P+ G  V R  A +PG
Sbjct: 645 DTIAVPNNGYVVLRLRANNPG 665


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 81  PCVHPIPGGMYP 116
           P ++P P G YP
Sbjct: 162 PPMYPFPAGQYP 173


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 81  PCVHPIPGGMYP 116
           P ++P P G YP
Sbjct: 54  PPMYPFPAGQYP 65


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -1

Query: 321 ACXGIPPXVSSAPQLMXLRWF 259
           +C  +PP +  +   M + WF
Sbjct: 115 SCLYVPPGIFKSTCKMDITWF 135


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -1

Query: 321 ACXGIPPXVSSAPQLMXLRWF 259
           +C  +PP +  +   M + WF
Sbjct: 115 SCLYVPPGIFKSTCKMDITWF 135


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -1

Query: 321 ACXGIPPXVSSAPQLMXLRWF 259
           +C  +PP +  +   M + WF
Sbjct: 115 SCLYVPPGIFKSTCKMDITWF 135


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -1

Query: 321 ACXGIPPXVSSAPQLMXLRWF 259
           +C  +PP +  +   M + WF
Sbjct: 115 SCLYVPPGIFKSTCKMDITWF 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.126    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,714
Number of Sequences: 336
Number of extensions: 1667
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)