Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0089.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   3.3  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    24   7.6  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    24   10.0 
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    24   10.0 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   10.0 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    24   10.0 

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 86  RAPHPGRHVPRAHAP-HPGQSAAR 154
           R P  G+H  RAH P HP Q   R
Sbjct: 370 RPPRKGKHNDRAHPPIHPVQMVHR 393


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 207 DDIALHLNFRFVEMCVCGT 263
           DD     N+RF+E   CGT
Sbjct: 297 DDSTSPSNYRFIESVTCGT 315


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 247 ISTKRKLRCSAMSSRGSVLGPHCRLIANLCAPG 149
           + +   + C A       LGP  R++  LC PG
Sbjct: 332 VGSSSAVNCVAAVRLAKKLGPGHRIVTLLCDPG 364


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 106 ACTQGACSASRAECRPAHRGSRSTCSAD 189
           +C  G C+++  +C+     S  +C +D
Sbjct: 414 SCASGVCTSASRQCKKLTNFSSLSCHSD 441


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 101 GRHVPRAHAPHPGQSAARRTEVRDQP 178
           G  +P AHAPH  Q+  RR+   + P
Sbjct: 134 GATLPNAHAPH-SQNRRRRSNHLNNP 158


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 113 PRAHAPHPGQSAARRTEVRDQPAV 184
           P A +P PG +     E+RD+ AV
Sbjct: 304 PTAVSPFPGAATGSGGEIRDEGAV 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.126    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,583
Number of Sequences: 5004
Number of extensions: 22980
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)