Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0089.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 31 0.25
10_01_0006 + 74000-76441 31 0.44
04_04_1496 + 33986938-33987225,33988545-33988664 30 0.59
01_06_1106 + 34563368-34563679 30 0.59
03_05_0615 + 26137785-26138593,26139307-26141368 30 0.77
02_05_0496 - 29499959-29500653,29501039-29501093 29 1.0
11_01_0566 + 4466318-4466695,4466736-4466909,4466941-4467038,446... 29 1.4
08_02_0252 + 14868530-14868757 29 1.8
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458... 29 1.8
07_03_1156 - 24416835-24417461 28 3.1
04_03_0041 + 10046063-10046170,10046284-10046742 28 3.1
12_02_0263 - 16551831-16551909,16552668-16553173 27 4.1
11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219 27 4.1
10_08_0933 + 21661209-21662813 27 4.1
10_07_0084 + 12748685-12749146 27 4.1
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 27 4.1
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 27 4.1
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 27 4.1
07_03_1697 - 28795521-28797328,28797430-28797550 27 5.5
07_03_0283 + 16241231-16241625,16241774-16241783 27 5.5
06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330 27 5.5
03_06_0069 - 31449319-31450368 27 5.5
02_05_0876 - 32399066-32399920 27 5.5
01_06_0505 - 29871692-29872198,29878940-29879359 27 5.5
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 27 5.5
12_02_0640 - 21447470-21448309 27 7.2
12_02_0635 - 21430245-21431156 27 7.2
12_01_0088 - 698169-698614,699514-700819,703041-703148 27 7.2
11_01_0087 - 654461-654912,655878-657186,659080-659187 27 7.2
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 27 7.2
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127 27 7.2
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 27 7.2
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 27 7.2
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 27 7.2
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 26 9.5
08_02_1200 + 25234208-25234370,25238527-25238819,25240003-252402... 26 9.5
07_03_1157 - 24419157-24419948 26 9.5
07_01_0091 - 692416-693906 26 9.5
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 26 9.5
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 26 9.5
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 26 9.5
02_04_0470 - 23183925-23184743,23184929-23185153 26 9.5
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 26 9.5
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 26 9.5
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.25
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +2
Query: 62 DIQPGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQ 229
DI P AP P R P +P+P S R + + +P R HG G+ R PQ
Sbjct: 36 DIPPPPRAAAPAPDRIGPILPSPNPA-SEDRPQQQQRRPR-RRNHGGGGQRRGPPQ 89
>10_01_0006 + 74000-76441
Length = 813
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 181 CRLIANLCAPGGTLPWMRSMRPGYMPPGMGC 89
C+ AN+C P G PGY P G+GC
Sbjct: 277 CQGEANICVPQGADNTTCVCPPGYRPQGLGC 307
>04_04_1496 + 33986938-33987225,33988545-33988664
Length = 135
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 50 GSTXDIQPGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQ 175
G+ D++ GD+V A P R R++A G +A R E +++
Sbjct: 32 GAAADLEAGDSVAADPPARPSSRSYARLRGLTATRPQEAKER 73
>01_06_1106 + 34563368-34563679
Length = 103
Score = 30.3 bits (65), Expect = 0.59
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Frame = +2
Query: 92 PHPGRHVPRAHAPHP-----GQSAARRTEVRDQPAVRTQHGPAGRH 214
P PGR P A AP P G + RR R R +HGP H
Sbjct: 33 PRPGRVPPSASAPPPAELRHGPNRCRRPPWRRLQPARLRHGPDKHH 78
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 29.9 bits (64), Expect = 0.77
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 148 GTLPWMRSMRPGYMPPGMGCTHGIT 74
G +PW+++ R +MP C HG++
Sbjct: 840 GAMPWVQTFRLWFMPCWKSCDHGVS 864
>02_05_0496 - 29499959-29500653,29501039-29501093
Length = 249
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 110 VPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLP 235
+P A PH QS + + PA + QHGP H A P
Sbjct: 64 IPPAEPPHQ-QSPEPQPQTPPPPAQQQQHGPEHEHHQAQPQP 104
>11_01_0566 +
4466318-4466695,4466736-4466909,4466941-4467038,
4467211-4467346
Length = 261
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 346 QRLEGLPVGVXRHPAXRLLGAPAHXAEVVPQTHISTKRKLRCSAMSSRGSVLGPH 182
Q + G+P GV A + +P AE+ P + TK ++C S+G G H
Sbjct: 137 QTMMGVPEGVLVPDASSEVFSPWLIAEMDPMMLMVTKCSMKCPECDSKGWATGIH 191
>08_02_0252 + 14868530-14868757
Length = 75
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +2
Query: 101 GRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPA----GRHRAAPQLPLRGDVRLRNHL 268
GR P P + + + E R + R +H P G+ A PQ LR +R+R
Sbjct: 10 GRPAPTQAQPMLRRQHSAQNECRREGVDRLEHKPPECVKGKENARPQRLLRVRIRIRREG 69
Query: 269 SXMSWG 286
WG
Sbjct: 70 VLRMWG 75
>03_04_0204 -
18444903-18445054,18445445-18445676,18445765-18445836,
18446201-18446347,18446559-18446614,18446727-18446832,
18446938-18447025,18447112-18447230,18448975-18449580,
18449803-18449898,18450232-18450422,18453287-18453416,
18453531-18453566
Length = 676
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 74 GDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVR 187
GD PG +PR +P PG+ + + E+ VR
Sbjct: 593 GDGSSGSMPGNMLPRTSSPKPGKGSREQQEIEKTGGVR 630
>07_03_1156 - 24416835-24417461
Length = 208
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +2
Query: 92 PHPG-RHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLP 235
PHP +P+ PHP + E P V P H P+LP
Sbjct: 134 PHPVVPELPKPEVPHPAVPELPKHEEPPHPVVPELPKPEVPHPVVPELP 182
>04_03_0041 + 10046063-10046170,10046284-10046742
Length = 188
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 98 PGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGP-AGRHRAAPQ 229
P P+A AP P + AA+ +D A + + P AG R AP+
Sbjct: 110 PAAPAPKAAAPKPAKDAAK--PKKDAAAAKPKKAPAAGTKRKAPE 152
>12_02_0263 - 16551831-16551909,16552668-16553173
Length = 194
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +2
Query: 68 QPGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGD 247
QP P P + P + AP P QS A + + Q A A ++ L+
Sbjct: 89 QPPQPPPQPQPQQQQPHSGAPSPSQSQASPQQQQQQQAAAMAAAAARVRSPEVEMALQDA 148
Query: 248 VRLRN 262
+R+ N
Sbjct: 149 MRVCN 153
>11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219
Length = 306
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Frame = -2
Query: 266 GGSADAHL------HEAEVEVQRDVVPRVRVGSALQVDREPLCAGRHSALDAEHAPWVH 108
GG DA L H EVQ + R S L +D PL +GR + L+ H VH
Sbjct: 108 GGGGDARLVDLWFRHAVLCEVQALRLNAPRSASRLVLDGLPLVSGRLAKLELAHLNLVH 166
>10_08_0933 + 21661209-21662813
Length = 534
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 65 IQPGDTV-RAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRH 214
+ GD V R P P + R H A R + RD P +R GPA H
Sbjct: 407 VNAGDVVTRVPAPA--MAREGEGHVHAGAELRLDSRDSPCLRPDAGPACCH 455
>10_07_0084 + 12748685-12749146
Length = 153
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +2
Query: 26 NSRKKNKNGSTXDIQPGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPA 205
++R+ S+ P +A GR P A + PG++AA E + P +R +
Sbjct: 12 HARRSGVASSSRRRSPLRFSQAQSAGRKQPSATSRRPGEAAAPPPEKKAPPLLRAAKASS 71
Query: 206 GRHRAA 223
RAA
Sbjct: 72 RSFRAA 77
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 399 QKCTPFSATLRARGSXSTSAXKVSPLACXGI 307
Q+ ATL A G + SA +VS +AC GI
Sbjct: 1406 QRTALSGATLSAEGVWNASAGEVSMVACRGI 1436
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 387 PFSATLRARGSXSTSAXK--VSPLACXGIPPXVSSAPQLMXLRW 262
P S+ + A GS +T A + S GIPP S P + L W
Sbjct: 540 PSSSAVTAGGSTATIAGEGSTSDSGLSGIPPAASPPPPPLPLSW 583
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 172 IANLCAPGGTLPWMRSMRPGYMPPGMGCTHGITGLYIXGTAIF 44
IANL L ++ G +PPG+G GI L G +F
Sbjct: 369 IANLSRSIQWLSMAKNQISGIIPPGIGSLKGIEDLEFQGNNLF 411
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = +2
Query: 95 HPGRHVPRAH----APHPGQSAARRTEVRDQPAVRTQHGPAGRHRAA 223
H RH P H PH G+ A + RTQ PA R AA
Sbjct: 357 HDARHGPSCHHGCCPPHHGKQACTSCRGQHCCRPRTQESPAPRRPAA 403
>07_03_0283 + 16241231-16241625,16241774-16241783
Length = 134
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -3
Query: 223 CSAMSSRGSVLGPHCRLIANLCAPGGTLPWMRSMRPG-YMP-PGMGCTHGITGLY 65
C A +S S HC + +L + G ++R G +P PG C G+ GLY
Sbjct: 20 CFAATSSSSSSQLHCGTVTSLLS--GCAAFVRGHGGGAQLPSPGTPCCDGVAGLY 72
>06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330
Length = 426
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 390 TPFSATLRARGSXSTSAXKVSPLACXGIPPXVSSAPQL 277
T + L +G + +A + + L G PP SSAPQ+
Sbjct: 309 TSVISCLPEQGKHAAAAARPTALTLGGAPPHESSAPQI 346
>03_06_0069 - 31449319-31450368
Length = 349
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 113 PRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLR 241
P + + +S+A+ T+ R A + HG AA Q PLR
Sbjct: 28 PTSSSSTSSRSSAQATQQRSSSATSSPHGQGQGGGAAEQAPLR 70
>02_05_0876 - 32399066-32399920
Length = 284
Score = 27.1 bits (57), Expect = 5.5
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Frame = +2
Query: 32 RKKNKNGSTXDIQPGDTVRAPHPG-RHVPRAHAPHPGQSAARRTEVRDQ-----PAVRTQ 193
R K S + GD R P P P A AP +S R + R + PA T
Sbjct: 14 RSSKKRSSRPKPRAGDAARHPAPNPSPPPAAAAPASSRSRERERKRRQRGAFADPAAVTA 73
Query: 194 HGPAGRHRAAPQLPLRGD 247
G+H A Q L GD
Sbjct: 74 PAAGGQHGGAVQ-KLWGD 90
>01_06_0505 - 29871692-29872198,29878940-29879359
Length = 308
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -3
Query: 289 GAPAHXAEVVPQTHISTKRKLRCSAMSSRGSVLGPHCRLIANLC 158
G P + P K K RC+A R ++G CR A C
Sbjct: 226 GIPVDEGAMPPPPPPRAKTKSRCAACGRRVGLMGFECRCGAVFC 269
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 104 RHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLR 241
R +PR AP P + RR + A RT AG P L LR
Sbjct: 66 RIIPRPGAPPPLLATPRRAVLASATASRTSFHRAGLCHRRPHLLLR 111
>12_02_0640 - 21447470-21448309
Length = 279
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +2
Query: 71 PGDTVRAPHPGRHVPRAHAPHPG---QSAARRTEVRDQPAVRTQHGPAG 208
P + +P P R PR P PG + A V +QP T H AG
Sbjct: 213 PPERRESPSPPRGRPRTPPPPPGSPKKPATPGAVVVEQPGPPTDHREAG 261
>12_02_0635 - 21430245-21431156
Length = 303
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +2
Query: 71 PGDTVRAPHPGRHVPRAHAPHPG---QSAARRTEVRDQPAVRTQHGPAG 208
P + +P P R PR P PG + A V +QP T H AG
Sbjct: 210 PPERRESPSPPRGRPRTPPPPPGSPKKPATPGAVVVEQPGPPTDHREAG 258
>12_01_0088 - 698169-698614,699514-700819,703041-703148
Length = 619
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 149 RHSALDAEHAPWVHAAR 99
RH A+ A HA WVH +R
Sbjct: 92 RHDAIIAFHASWVHPSR 108
>11_01_0087 - 654461-654912,655878-657186,659080-659187
Length = 622
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 149 RHSALDAEHAPWVHAAR 99
RH A+ A HA WVH +R
Sbjct: 92 RHDAIIAFHASWVHPSR 108
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -3
Query: 295 LLGAPAHXAEVVPQT-HISTKRKLRCSAMSSRGSVLGPHCRLIANLCAPGGTLPWMRSMR 119
+L A+ E + T HI+ RK + S + + ++ PH R+ L PG +
Sbjct: 36 ILNTYANVLEGLANTLHITPNRKQKISILHNVSGIIKPH-RMTLLLGPPGAGKTTLLLAL 94
Query: 118 PGYMPPGMGCTHGIT 74
G +P G+ + IT
Sbjct: 95 AGNVPSGLKVSGQIT 109
>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
Length = 649
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 21 FETQGKRIKMAVPXIYNPVIPCVHPIPGGMYPGRMLRIQGRVPPGAQRFAINLQCGPNTD 200
+ T RI++ + +P + + P G YP + I+G V Q F + CG D
Sbjct: 229 YATSAGRIRVVNLLLEDPTLAYL-PNSYGQYPVHIAAIKGHVHIVDQFFELYPNCGELLD 287
Query: 201 PRDDIALH 224
ALH
Sbjct: 288 NNGRNALH 295
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +2
Query: 95 HPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRLRNHLSX 274
H R H+ G+ +R D P+ + H P R A P R +
Sbjct: 184 HGADREERLHSRRDGRGYSRSPRRHDSPSNQRNHSP--RRYALPSNERYDGTR---RYAS 238
Query: 275 MSWGAEETXGGMPXHANGET 334
S+G + + GG ANG +
Sbjct: 239 PSYGRDRSPGGNALPANGRS 258
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +2
Query: 74 GDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRH----RAAPQLPL 238
G P P P A AP P Q RR+ + PA P G H RAA +P+
Sbjct: 3 GSAAIPPRPAP-TPPAPAPAPPQVFLRRSVLPPPPAPHHAPPPPGAHVHYFRAASPIPI 60
>03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 122 HAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRG 244
H PG+ +R E R Q + Q GP + P+LP G
Sbjct: 976 HPDQPGEKPGKR-ETRVQVGMLDQVGPKKIGKTTPKLPQNG 1015
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 38 KNKNGSTXDIQ--PGDTVRAPHPGRHVPRAH 124
K NG + D+Q T+R P PGRH P +
Sbjct: 93 KRLNGLSTDLQMFAHKTLRIPLPGRHPPSTY 123
>08_02_1200 +
25234208-25234370,25238527-25238819,25240003-25240243,
25240523-25240855,25240940-25241025,25241133-25242575
Length = 852
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 65 IQPGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRA 220
+QP ++ PG+ + A A PGQ+ A R++ + + AG+ A
Sbjct: 133 VQPKSSIDEGTPGKRIFFAKAYLPGQTPAGLRSYREEDLKQKRGNGAGQREA 184
>07_03_1157 - 24419157-24419948
Length = 263
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +2
Query: 92 PHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLP 235
PHP VP PHP + E P V P H A P+LP
Sbjct: 147 PHPA--VPEI--PHPAVPELPKHEEPPHPVVPELPKPEVPHAAVPELP 190
>07_01_0091 - 692416-693906
Length = 496
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 83 VRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVR-TQHGPAGRHRAAP 226
+RAP P PRA H R V PA R +H P R R AP
Sbjct: 221 LRAPPPPPPAPRAPVYHHPLPLGPRVAVLAAPAPRPARHAPV-RARVAP 268
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 89 APHPGRHVPRAHAPHPGQSAARRTEVR-DQPAVRTQHGPAGRHRAAPQL 232
APH +PRAH P R+ VR + RTQ P A QL
Sbjct: 1799 APHLQFRLPRAHPTAPVNQQQRQLPVRLESTCSRTQLTPVSTPVNARQL 1847
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = +2
Query: 119 AHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRLRNHLSXMSWGAEET 298
A A PG +AR P R AG RA + L R HL +S+G E
Sbjct: 92 AAASGPGGGSARSAAAA-APTGRPGTVAAGTRRAGKKAVLDAGGRRVGHLRRLSYGVRER 150
Query: 299 XGG 307
G
Sbjct: 151 GSG 153
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 PGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQ-PAVRTQHGPAGRHRAAP 226
P R P P A A S ARR++ ++ PA ++ P G AAP
Sbjct: 47 PATPRRHPSPNAGRSSAAAAEAAGSQARRSQSTERRPATPSRLSPGGSRAAAP 99
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 26.2 bits (55), Expect = 9.5
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = +2
Query: 92 PHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHG-PAGRHRAA--PQLPLRG--DVRL 256
P PG VP P P A RR R P+ P R R + P P RG DVR
Sbjct: 252 PDPGTAVPDPRPPPPPPKARRRPCRRRPPSPMAYSTLPTVRLRPSRRPSTPCRGCHDVRR 311
Query: 257 R 259
R
Sbjct: 312 R 312
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/57 (31%), Positives = 21/57 (36%)
Frame = +2
Query: 74 GDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRG 244
GD H H H H G SAA ++ T G G H AP P +G
Sbjct: 562 GDVDHHHHHHGHHHHGHHHHEGSSAAAAAPDLEEIVATTSGGEDG-HPPAPPPPPQG 617
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 95 HPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLP 235
HP + H P P + RR V P + P R+R +P P
Sbjct: 79 HPTKRQAAPHEPSPSRRVTRRVSVHIPPQI-----PQCRNRKSPTSP 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.126 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,665
Number of Sequences: 37544
Number of extensions: 234585
Number of successful extensions: 906
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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