Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0089.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)                    32   0.20 
SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.35 
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_27245| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_24786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_54736| Best HMM Match : TF_Otx (HMM E-Value=1.7)                    28   3.2  
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_16308| Best HMM Match : MSSP (HMM E-Value=5)                        27   4.3  
SB_57837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)                   27   5.6  
SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)                     27   7.4  
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.4  
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 26   9.8  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_10665| Best HMM Match : PT (HMM E-Value=6.2)                        26   9.8  
SB_7791| Best HMM Match : SSDP (HMM E-Value=0.41)                      26   9.8  
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)                     26   9.8  
SB_21877| Best HMM Match : TF_Otx (HMM E-Value=3.1)                    26   9.8  
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)                   26   9.8  

>SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)
          Length = 808

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
 Frame = +2

Query: 71  PGDTVRAPHPGRHVPR-----AHAPHPGQSA 148
           P D   +P PGRH PR      H P PGQ A
Sbjct: 224 PYDPTMSPRPGRHSPRMSGSPVHQPRPGQGA 254


>SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 92  PHPGRHVPRAHAPHPGQSAARRTEVR-DQPAVRTQHGPA 205
           PH   HVP+A  PHP Q   R  EVR D    R   GP+
Sbjct: 289 PHMSTHVPQAGFPHPDQ-PQRLQEVRGDARQSRAMPGPS 326


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 187 PHCRLIANLCAPGGTLPWMRSMRPGY 110
           PH R++    AP G  PW   +R  Y
Sbjct: 136 PHTRIVGGTKAPPGAWPWQAMLRSNY 161


>SB_27245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +2

Query: 50  GSTXDIQPGDTVRA--PHPGRHVPRAHAPHPGQSAARRTEVRDQP 178
           GST   QPG    A  P PG H   A  P    SA R   V DQP
Sbjct: 45  GSTHSRQPGGFPGAARPPPGWHPGSAGEPVESDSAVRVPPVCDQP 89


>SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +2

Query: 113 PRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRLRNHLSXMSWGAE 292
           PRA A  P  S    + V     +R   GP+G   A+      G  R  N  S  S    
Sbjct: 469 PRAFATAPSVSEVPASTVPSSSPLRCSPGPSGTISASTS----GSPRTLNQDSPPSPSQP 524

Query: 293 ETXGGMPXHANG--ETFXALVLXEPRAL 370
           E+ GG      G  E   +L+L EP +L
Sbjct: 525 ESDGGDDEDVVGPMEEASSLLLEEPSSL 552


>SB_24786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 208 SRGSVLGPHCRLIANLCAPGGTL 140
           +R ++L P  RL++N C+PG  L
Sbjct: 15  TRYAILSPRARLVSNSCSPGDPL 37


>SB_54736| Best HMM Match : TF_Otx (HMM E-Value=1.7)
          Length = 123

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = +2

Query: 113 PRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRLRNHLSXMSWGAE 292
           PRA A  P  S    + V     +R   GP+G   A+      G  R  N  S  S    
Sbjct: 21  PRAFATAPSVSEVPASTVSSSSPLRRSPGPSGTISASTS----GSPRTLNQDSPPSPSQP 76

Query: 293 ETXGGMPXHANG--ETFXALVLXEPRALKVALNG 388
           E+ GG      G  E   +L+  EP +L  ++ G
Sbjct: 77  ESDGGDDEDVVGPMEEASSLLPEEPSSLPSSVQG 110


>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 92  PHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAG-RHRAAPQLP 235
           P PG   P AHA HPG     +      P +   H PAG R+R     P
Sbjct: 490 PPPGH--PHAHAHHPGHPGIHK------PIIHGLHQPAGVRYRCLEGFP 530


>SB_16308| Best HMM Match : MSSP (HMM E-Value=5)
          Length = 187

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 232 KLRCSAMSSRGSVLGPHCRLIANLCAPGGTLPWMRSMRPGYMPPGMGCTHGITGL 68
           KLR   MSS   + G  CR I N+C   G +P +    PG +    G    + GL
Sbjct: 57  KLRYVMMSS--GLGGNTCRSIGNMCVSLGKMPGLIGSIPGSIGNMYGTIGNMYGL 109


>SB_57837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 391 HAVQRHLEGARLXQHQRLEGLPV 323
           H     LEGARL QHQ +  LP+
Sbjct: 244 HLFLAQLEGARLRQHQVVTTLPI 266


>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
          Length = 1445

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 32  RKKNKNGSTXDIQPGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPA 205
           R+  K+GS  ++Q  +T+ AP P   +  A  P  G+       +++ P    +  PA
Sbjct: 446 RELQKSGSNLEVQFDETIPAPTPTTPISPA-IPASGRPIRTPIPLKETPTPALESAPA 502


>SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)
          Length = 1094

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 56  TXDIQPGDTVRAP--HPGRHVPRAHAP 130
           T  +QPG+ V     HPG  +P +H P
Sbjct: 911 TGSVQPGERVFTSNEHPGTAIPESHLP 937


>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 71  PGDTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQPAVRTQHGPAG--RHRAAPQLPLRG 244
           P    R+  PGR   R+ +P   ++AAR +    +   R+   P+     +  P+ P R 
Sbjct: 134 PSRRARSRSPGRRRSRSRSPARRRTAARSSPSPPKRQGRSPGRPSNVTAEKNEPETPKRS 193

Query: 245 DVRLR 259
            VR R
Sbjct: 194 PVRSR 198


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 32  RKKNKNGSTXDIQPGDTVRAPHPGRHVPRAHAPHPGQSAARRTE 163
           RK+++        P    R+P  G H P+  +  P +++ R  E
Sbjct: 212 RKRSRTPRKRSRSPRKRSRSPRKGSHTPKKRSRSPRRNSQRHKE 255


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 150 PGAQRFAINLQCGPNTDPRDDIALHLN 230
           PG    A+NL  G   DPRD I  H+N
Sbjct: 479 PGDYEKAVNLLEGRFGDPRDVIEAHVN 505


>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 62  DIQPGDTVRAPHPGRHVPRAHAPH 133
           +  PGD+ + P PG+H P     H
Sbjct: 326 NFMPGDSTQKPGPGQHSPEKVVMH 349


>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 53  STXDIQPGDTVRAPHPGRHVPRAHAP-HPGQSAARRTEVRDQPAVR 187
           ST +    +  R P P R V R   P +P +  AR+T  RD P  R
Sbjct: 32  STSERSHVENFRKPTPARRVTRPGVPVNPPRHLARKTP-RDYPRAR 76


>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
          Length = 215

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +2

Query: 77  DTVRAPHPGRHVPRAHAPHPGQSAARRTEVRDQ-PAVRTQHGP 202
           D  R PH G H      PH       RT  R      RT HGP
Sbjct: 145 DPTRTPH-GPHTDPTWTPHRPHMDPTRTPHRPHMDPTRTSHGP 186


>SB_7791| Best HMM Match : SSDP (HMM E-Value=0.41)
          Length = 901

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = -3

Query: 328  PVGVXRHPAXRLLGAPAHXAEVVPQTHISTKRKLRCSAMSSRGS--VLGPHCRLIANLCA 155
            P+ +  HP   ++ AP H + V     +ST+  L     +++GS   + P  +++ +   
Sbjct: 796  PIAIAPHPGTAVMAAPIHASSV-----LSTQYSLPIMTSATQGSKFAVTPLQQILRSTSP 850

Query: 154  PGGTLPWMRSMRPGYMPPGMGCTHG 80
                +    S  PG+  P      G
Sbjct: 851  SLAAMTSQPSAAPGHQQPNYAGLRG 875


>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
          Length = 1182

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 128 PHPGQSAARRTEVRDQPAVRTQHGPAGR 211
           P P + ++++   R+    R  HGPAGR
Sbjct: 501 PRPSKDSSKKHRRREFGQARFAHGPAGR 528


>SB_21877| Best HMM Match : TF_Otx (HMM E-Value=3.1)
          Length = 154

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = +2

Query: 113 PRAHAPHPGQSAARRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRLRNHLSXMSWGAE 292
           PRA A  P  S    + V     +R   GP+G   A+      G  R  N  S  S    
Sbjct: 52  PRAFATAPSVSEVPASTVPSSSPLRCSPGPSGTISAS----TFGSPRTLNQDSPPSPSQP 107

Query: 293 ETXGGMPXHANG--ETFXALVLXEPRALKVALNG 388
           E+ GG      G  E   +L+  EP +L  ++ G
Sbjct: 108 ESDGGDDEDVVGPMEEASSLLPEEPSSLPSSVQG 141


>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
          Length = 386

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 220 SAMSSRGSV-LGPHCRLIANLCAPGGTLPWMRSMR 119
           S MS  GS  + PH R++    A   + PW   +R
Sbjct: 38  SVMSCGGSCGIRPHTRIVGGTAAKQNSWPWQAQLR 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.126    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,579
Number of Sequences: 59808
Number of extensions: 239312
Number of successful extensions: 799
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)