Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0089.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42740.1 68414.m04939 hypothetical protein                          27   3.5  
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2...    27   4.6  

>At1g42740.1 68414.m04939 hypothetical protein
          Length = 359

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 72  PVIPCVHPIPGGMYPGRMLRIQGRVPPGAQRFAINLQCGPNTDPRD 209
           P IP  HP     + GR   +   +PP   R +      P +DP D
Sbjct: 313 PPIPKCHPTDVPHFHGRSQALNAPIPPWMMRCSSKKHLLPPSDPPD 358


>At4g12780.1 68417.m02005 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 485

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 251 AHLHEAEVEVQRDVVPRVRVGSALQVDREPLCAGRHSALDA 129
           A  +E +++VQR+ V + R+G  L V+ +   AG+   L A
Sbjct: 367 AEKNERDLQVQREQVEKDRIGVTLDVEIKRWGAGKEGNLRA 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.126    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,608,095
Number of Sequences: 28952
Number of extensions: 144632
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)