Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0085.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.6  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   1.6  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   2.7  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   4.8  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.4  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   8.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 35   QAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDP 172
            QA  +   V PAV+A + T P VV  V HP   P   +    ++DP
Sbjct: 1284 QASAVSSNV-PAVSASISTPPAVVPTVQHPQ--PTKQIPTAAVKDP 1326


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 352 LAVPVTLMQAPQKNPPRPLVAALK 423
           L  PV L Q P + PP P + ALK
Sbjct: 166 LGQPVLLTQRPCETPPTPSIEALK 189


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 366 YWNCQWPIHFHHDCLSYIHKCCYR 295
           Y NC WP+ +  D +   ++C YR
Sbjct: 188 YINCWWPVFYEKDFMDE-YECLYR 210


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 274 LQDPVHPAVAALMDIAQAIVMEV 342
           L D VHPA   L+DIA+A   EV
Sbjct: 72  LLDIVHPAAKTLVDIARAQDAEV 94


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 277 QDPVHPAVAALMDIAQAIVMEVYW 348
           Q+P++P +A    + + +V+ +YW
Sbjct: 519 QNPLYPVMAEFCTVLKNLVLGLYW 542


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 358 VPVTLMQAPQKNPPRPLV---AALKDIVPV 438
           +PV L   P + PP P +   AAL DI+ +
Sbjct: 367 MPVALSPKPAQKPPSPTIHTKAALADILDI 396


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 349  PLAVPVTLMQAPQKNPPRPLVAA 417
            P+A PV+  Q  Q  PP P + A
Sbjct: 1011 PMANPVSTAQQTQNRPPAPAMQA 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,625
Number of Sequences: 5004
Number of extensions: 34805
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)