Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0085.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 40 0.002
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 36 0.014
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 30 0.92
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 30 1.2
SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05) 29 1.6
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 2.1
SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 2.8
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 3.7
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09) 28 4.9
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 27 8.6
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/81 (25%), Positives = 32/81 (39%)
Frame = -1
Query: 244 CPWMIHFHHDCWNCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRR 65
CPW + D C C +R + + +H C CRW + D C C +R
Sbjct: 81 CPWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR- 135
Query: 64 MYWILQGLCLHQCYWNCRWMI 2
+ + +H C CRW +
Sbjct: 136 ---LDRQADIHTCKSTCRWRL 153
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/81 (25%), Positives = 32/81 (39%)
Frame = -1
Query: 244 CPWMIHFHHDCWNCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRR 65
C W + D C C +R + + +H C CRW + D C C +R
Sbjct: 115 CRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR- 169
Query: 64 MYWILQGLCLHQCYWNCRWMI 2
I + +H+C CRW +
Sbjct: 170 ---INRQADIHRCKSTCRWQL 187
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/81 (25%), Positives = 31/81 (38%)
Frame = -1
Query: 244 CPWMIHFHHDCWNCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRR 65
C W + D C C +R + + +H C CRW + D C C +R
Sbjct: 98 CRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR- 152
Query: 64 MYWILQGLCLHQCYWNCRWMI 2
+ + +H C CRW I
Sbjct: 153 ---LDRQADIHTCKSTCRWRI 170
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = -1
Query: 202 IHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWILQGLCLHQCY 23
IH C + + + +H C CRW + D C C +R + + +H C
Sbjct: 74 IHTCKSTCPWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCK 129
Query: 22 WNCRWMI 2
CRW +
Sbjct: 130 STCRWRL 136
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -1
Query: 223 HHDCWNCIHKCCY---RPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRRMY 59
H+ C+ H CCY R Y+ C ++ +++ H++H C H CCYR +
Sbjct: 13 HNRCYRHHHYCCYCHHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYR-HHYCCYRHRH 69
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -2
Query: 447 HHGYWNYILQCCYQRTWWILLWCLHQCYWNCQWPIHFHHDCLSYIHKCCYRRMY 286
H+ + + CCY +C ++ + C + H+H+ C + + CYR Y
Sbjct: 13 HNRCYRHHHYCCYCHH----RYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHY 62
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 30.3 bits (65), Expect = 0.92
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -2
Query: 195 SAATARCTGSCKVCACISVTGTAXXXXXXXXXXXXXXXSAATAGCTGSCKVCACISVTGT 16
+AATA TG+ A ++ T TA + AT T + A ++VT T
Sbjct: 150 AAATATATGTTTATATVTATATATVTAAATATATATATATATTTSTATVTATATVTVTAT 209
Query: 15 A 13
A
Sbjct: 210 A 210
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 214 CWNCIHKC-CYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYR 68
C+ I++ C P +L+ C HQC C W HH+C + C R
Sbjct: 405 CYKDIYEVKCLEPCKDLLK--CEHQCEELCAWKCR-HHECTKLCGEICDR 451
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 390 LLWCLHQCYWNCQWPIHFHHDCLSYIHKCCYR 295
LL C HQC C W HH+C + C R
Sbjct: 421 LLKCEHQCEELCAWKCR-HHECTKLCGEICDR 451
>SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 405 RTWWILLWCLHQCYWNCQWPIHFHHDCLSYIHKCCYRRMY 286
R WW + C C + P+H H+ C S+ +K C+ Y
Sbjct: 260 RMWWHGVNCTTYCVPHMD-PVHGHYTCDSHGNKTCHPGWY 298
>SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)
Length = 444
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -1
Query: 220 HDCWNCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWILQGL 41
+DC N C Y Y + G C + ++C +DC N C Y Y + G
Sbjct: 309 YDCMNGY--CRYVSTYDCMNGYCRYVSTYDCYCRYVSTYDCMN--GYCRYVSTYDCMNGY 364
Query: 40 CLHQCYWNC 14
C + ++C
Sbjct: 365 CRYVSTYDC 373
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -1
Query: 214 CWNCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCC 74
C+ + CY Y+ C + CY+ C ++HH C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -1
Query: 214 CWNCIHKCCYRPMYWILQGLCLHQCYWNCR--WMIHFHHDCRNCIHKCC 74
C+ + CY Y+ C CY+ C + +++H C + CC
Sbjct: 472 CYCYCYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYYCCC 520
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -2
Query: 465 RWMLRFHHGYWNYILQCCYQRTWWILLWCLHQCYWNCQWPIHFHHDCLSYIHKCC 301
R+ + + Y+ C Y ++ +C + CY+ C ++HH Y + CC
Sbjct: 468 RYCYCYCYCYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHHYYCCY-YCCC 520
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -1
Query: 190 CYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKC-CYRRMYWILQGLCLHQCYWNC 14
CY Y+ C + CY+ C + C C + C CY Y+ C + C +C
Sbjct: 472 CYCYCYYYCYCYCYYYCYYYC------YCYCYYCCYYCYCY---YYYHHYYCCYYCCCSC 522
>SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 90 QFRQS*WKCIIHRQFQ*H*CKHRPCRIQ 173
+F S WKC++ FQ K R C++Q
Sbjct: 329 EFNSSTWKCVLSETFQPFSVKPRTCKLQ 356
>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +2
Query: 2 YHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHR 181
Y PA+ TL+ LQ P + A+ DT+ Y PA+ TL+ LQ P +
Sbjct: 303 YRHPAITDTLL----LQTPCYYRHPAITDTLLLQTSRYYRHPAITDTLL----LQTPCYY 354
Query: 182 AVAALMDTV 208
A+ DT+
Sbjct: 355 RHLAITDTL 363
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 382 PQKNPPRPLVAALKDIVPVAMMEA*HPPTVP 474
P +PPRPL A L + P+ M PPT+P
Sbjct: 233 PPPSPPRPLAAKLPEPPPIPNM----PPTLP 259
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 2 YHPPAVPVTLMQAQTL---QDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDP 172
+H +P L QAQ L +DP+ +A L D V E + PAV T+Q+
Sbjct: 546 FHHYELPAILSQAQQLDPEEDPLADPIAMLTDEVQVPPAEPHPAPAVNHQAPGQATIQNM 605
Query: 173 V 175
V
Sbjct: 606 V 606
>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
Length = 1472
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 349 PLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEE 489
P + P T + P K P P V + V M A PP +PAQV++
Sbjct: 1309 PNSAPHTSKKPPPK--PEPSVMGKHNHVASNQMNAGIPPQIPAQVQK 1353
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 208 NCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCY-RRMYWILQGL 41
N IH CC+RP Y I G LH R + + D R+ + Y R Y + Q +
Sbjct: 2 NAIHGCCHRP-YNIFHGEFLHS---YIRHAVSVNQDIRHAVFVNQYIRHAYSVNQDI 54
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 394 PPRPLVAALKDIVPVAMMEA*HPPTVPAQ 480
PPRP + D PV+ A PP P+Q
Sbjct: 433 PPRPYASQFADAPPVSPTTATPPPPPPSQ 461
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,202
Number of Sequences: 59808
Number of extensions: 307674
Number of successful extensions: 924
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -