Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0085.Seq
         (499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    27   0.47 
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    25   1.4  
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    23   5.8  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   7.6  

>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 373 MQAPQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEELS 495
           M   +  PPRPL +ALKDI       +  P + P+ + E S
Sbjct: 1   MSGNESLPPRPLGSALKDIGAFFGRSSKTPRSPPSDLGECS 41


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 17  VPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAVAAL 196
           VPV + Q   +  P HP   A    VP  V +VY P   P+ +   Q ++ P+++ +  +
Sbjct: 166 VPVPVFQKVGVPVP-HPVPIA----VPHYV-KVYIPQPYPLQVNVEQPIKIPIYKVIPKV 219

Query: 197 MD-TVPTVVMEVY 232
           ++  VP  V + Y
Sbjct: 220 IEKPVPYTVEKPY 232


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 133 NCRWMIHFHHDCRNCIHKCCYRR 65
           NCR     +H  RN   + CY++
Sbjct: 151 NCRTAARRNHSSRNTCRRNCYQQ 173


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 184  RPMYWILQGLCLHQCYW 134
            RPM W+LQ       YW
Sbjct: 1023 RPMSWLLQYFVSFATYW 1039


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,225
Number of Sequences: 2352
Number of extensions: 9281
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)