Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0085.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    33   0.73 
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    31   1.7  
BC117255-1|AAI17256.1| 1048|Homo sapiens Sin3A-associated protei...    31   2.2  
AY220791-1|AAO63591.1| 1048|Homo sapiens SIN3A-associated protei...    31   2.2  
AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens ...    31   2.2  
AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens ...    31   2.2  
AC118060-1|AAX88975.1|  315|Homo sapiens unknown protein.              31   2.2  
AB126070-1|BAD20197.1|  278|Homo sapiens keratin associated prot...    30   5.1  
U04441-1|AAB02882.1| 1751|Homo sapiens glycoprotein 330 protein.       29   6.8  

>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -1

Query: 229 HFHHDCWNCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL 50
           H H   +  IH   Y  +Y   + +C+H C + C     + +    C+H C +  MY   
Sbjct: 76  HMHTYMYIHIHAYAYIYVYSYTR-ICIHICVFICTHAYIYVYSYVQCMHMCIH--MY--- 129

Query: 49  QGLCLHQCYWNC 14
              C+H C + C
Sbjct: 130 --TCMHMCIFIC 139


>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 25/81 (30%), Positives = 35/81 (43%)
 Frame = +2

Query: 8    PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAV 187
            PPAV   L Q   L  P        M   P V++E   PPA P+T MQ Q     + + V
Sbjct: 887  PPAVSPALTQTPLLPQPP-------MAQPPQVLLEDEEPPAPPLTSMQMQLYLQQLQK-V 938

Query: 188  AALMDTVPTVVMEVYHPRAVP 250
                  +P+V ++   P  +P
Sbjct: 939  QPPTPLLPSVKVQSQPPPPLP 959


>BC117255-1|AAI17256.1| 1048|Homo sapiens Sin3A-associated protein,
           130kDa protein.
          Length = 1048

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 289 HPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPT 468
           H AVA+   +A         P AVP++  +   K PP+P + + + I P        PP 
Sbjct: 110 HHAVASATPVAVTAPPAHLTP-AVPLSFSEGLMKPPPKPTMPS-RPIAPAPPSTLSLPPK 167

Query: 469 VPAQV 483
           VP QV
Sbjct: 168 VPGQV 172


>AY220791-1|AAO63591.1| 1048|Homo sapiens SIN3A-associated protein
           130 protein.
          Length = 1048

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 289 HPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPT 468
           H AVA+   +A         P AVP++  +   K PP+P + + + I P        PP 
Sbjct: 110 HHAVASATPVAVTAPPAHLTP-AVPLSFSEGLMKPPPKPTMPS-RPIAPAPPSTLSLPPK 167

Query: 469 VPAQV 483
           VP QV
Sbjct: 168 VPGQV 172


>AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25557 fis, clone JTH02756. ).
          Length = 485

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +2

Query: 35  QAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAVAALMDTVPT 214
           + +T +     +V  ++ T+PT++M     P V VT++Q          A A     VP+
Sbjct: 373 EMETEEKEAGGSVMLILRTMPTLMMRTEDRPKVAVTMIQTAAAMGVASGAGATAAAPVPS 432

Query: 215 VVMEVYHPRAVPV 253
            V     PR + V
Sbjct: 433 PVAASTRPRRMAV 445


>AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
           GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
          Length = 710

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 289 HPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPT 468
           H AVA+   +A         P AVP++  +   K PP+P + + + I P        PP 
Sbjct: 84  HHAVASATPVAVTAPPAHLTP-AVPLSFSEGLMKPPPKPTMPS-RPIAPAPPSTLSLPPK 141

Query: 469 VPAQV 483
           VP QV
Sbjct: 142 VPGQV 146


>AC118060-1|AAX88975.1|  315|Homo sapiens unknown protein.
          Length = 315

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 289 HPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPT 468
           H AVA+   +A         P AVP++  +   K PP+P + + + I P        PP 
Sbjct: 110 HHAVASATPVAVTAPPAHLTP-AVPLSFSEGLMKPPPKPTMPS-RPIAPAPPSTLSLPPK 167

Query: 469 VPAQV 483
           VP QV
Sbjct: 168 VPGQV 172


>AB126070-1|BAD20197.1|  278|Homo sapiens keratin associated protein
           protein.
          Length = 278

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 19/74 (25%), Positives = 24/74 (32%)
 Frame = -3

Query: 482 TCAGTVGGCYASIMATGTISFSAATSGRGGFFCGACISVTGTASGQYXXXXXXXXXXXXX 303
           +C G+ GGC +     G       + G  G  CG C S  G                   
Sbjct: 169 SCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGV---PVCCCSCSSCGSCAG 225

Query: 302 XXAGCTGSCKVCAC 261
              GC  SC  C+C
Sbjct: 226 SKGGCGSSCSQCSC 239


>U04441-1|AAB02882.1| 1751|Homo sapiens glycoprotein 330 protein.
          Length = 1751

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = -1

Query: 223 HHDCWNCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDC------RNCIHKCCYRRM 62
           H +  NC  + C    +    GLC+ + +   R     H+DC      R C+++ C +  
Sbjct: 279 HDEIQNCTRRTCSENEFTCGYGLCIPKIFRCDR-----HNDCGDYSDERGCLYQTCQQNQ 333

Query: 61  YWILQGLCLHQCY 23
           +    G C+ + +
Sbjct: 334 FTCQNGRCISKTF 346


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,923,444
Number of Sequences: 237096
Number of extensions: 1521824
Number of successful extensions: 3850
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3845
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)