Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0085.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64840-6|AAB04964.1| 574|Caenorhabditis elegans Hypothetical pr... 32 0.20
U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical pr... 32 0.20
AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical... 29 1.4
Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical pr... 29 1.9
U64835-6|AAG24199.1| 341|Caenorhabditis elegans Serpentine rece... 29 1.9
AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein. 29 1.9
AF101317-1|AAC69234.1| 330|Caenorhabditis elegans Seven tm rece... 29 2.5
Z79603-8|CAH04750.1| 137|Caenorhabditis elegans Hypothetical pr... 27 5.7
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 23 6.4
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 23 6.4
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 23 6.4
Z82268-4|CAB05199.1| 741|Caenorhabditis elegans Hypothetical pr... 27 7.6
U23511-5|AAC46794.1| 578|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 27 7.6
Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical p... 27 10.0
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 27 10.0
U37429-16|AAA79341.1| 597|Caenorhabditis elegans Protein kinase... 27 10.0
U00066-7|AAY86272.1| 80|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF025666-1|AAB88885.1| 597|Caenorhabditis elegans protein kinas... 27 10.0
AF000193-1|AAB52891.1| 715|Caenorhabditis elegans Hypothetical ... 27 10.0
>U64840-6|AAB04964.1| 574|Caenorhabditis elegans Hypothetical
protein ZC317.7 protein.
Length = 574
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 56 PVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTLQDPV 175
P+HP +AA+ T +M V HP P +P+ +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243
>U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical
protein C14C11.2 protein.
Length = 574
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 56 PVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTLQDPV 175
P+HP +AA+ T +M V HP P +P+ +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243
>AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical
protein Y37D8A.26 protein.
Length = 88
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 154 CLHQCYWNCRWMIHFHHDCRNC 89
C C+W CR + HH C NC
Sbjct: 58 CFIVCFW-CRCFMDVHHRCPNC 78
>Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical
protein D2045.1b protein.
Length = 634
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +1
Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 405
P VA A V Y P P M APQ+ PP P
Sbjct: 176 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 213
>Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical
protein D2045.1a protein.
Length = 959
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +1
Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 405
P VA A V Y P P M APQ+ PP P
Sbjct: 501 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 538
>U64835-6|AAG24199.1| 341|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 9 protein.
Length = 341
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 489 LLHLCWNRRWMLRFHHGYWNYILQCCYQRTWWILLW 382
LLHL + W L Y NYIL TW + ++
Sbjct: 95 LLHLFIHSMWSLLLSFAYRNYILSSAPPSTWKVFMF 130
>AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein.
Length = 959
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +1
Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 405
P VA A V Y P P M APQ+ PP P
Sbjct: 501 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 538
>AF101317-1|AAC69234.1| 330|Caenorhabditis elegans Seven tm
receptor protein 16 protein.
Length = 330
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -2
Query: 465 RWMLRFHHGYWNYILQCCYQRTWWILLWCLHQCYWNCQWPIHF 337
+++ R+ + Y L+ Y + W+ L+W ++ ++ CQ+ I F
Sbjct: 110 QFLYRYFAIFHEYYLK--YFKGWYFLIWIVYAGWFGCQYAIGF 150
>Z79603-8|CAH04750.1| 137|Caenorhabditis elegans Hypothetical
protein M163.8 protein.
Length = 137
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 491 SSSTCAGTVGGCYASIMATGTISFSAATSGRGGFFCGACISVTGTAS 351
SSSTC + C AS + G + + T + +CGA ++ G AS
Sbjct: 72 SSSTCGDSNSNC-ASWASNGFCNSTFYTPAQKSQYCGATCNLCGGAS 117
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 23.4 bits (48), Expect(2) = 6.4
Identities = 10/37 (27%), Positives = 14/37 (37%)
Frame = +1
Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPR 402
PA + + VY P + P T + K P R
Sbjct: 187 PAAVTTKKVGSMMTQSVYTPTSRPATSSRLTMKQPAR 223
Score = 22.2 bits (45), Expect(2) = 6.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 382 PQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEEL 492
P+K P AA K PVA E P V A VE +
Sbjct: 254 PRKLPFGKPEAARKSASPVAAQEPTAPVVVVAPVEAI 290
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 23.4 bits (48), Expect(2) = 6.4
Identities = 10/37 (27%), Positives = 14/37 (37%)
Frame = +1
Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPR 402
PA + + VY P + P T + K P R
Sbjct: 197 PAAVTTKKVGSMMTQSVYTPTSRPATSSRLTMKQPAR 233
Score = 22.2 bits (45), Expect(2) = 6.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 382 PQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEEL 492
P+K P AA K PVA E P V A VE +
Sbjct: 264 PRKLPFGKPEAARKSASPVAAQEPTAPVVVVAPVEAI 300
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 23.4 bits (48), Expect(2) = 6.4
Identities = 10/37 (27%), Positives = 14/37 (37%)
Frame = +1
Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPR 402
PA + + VY P + P T + K P R
Sbjct: 187 PAAVTTKKVGSMMTQSVYTPTSRPATSSRLTMKQPAR 223
Score = 22.2 bits (45), Expect(2) = 6.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 382 PQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEEL 492
P+K P AA K PVA E P V A VE +
Sbjct: 254 PRKLPFGKPEAARKSASPVAAQEPTAPVVVVAPVEAI 290
>Z82268-4|CAB05199.1| 741|Caenorhabditis elegans Hypothetical
protein F52B11.3 protein.
Length = 741
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 98 TVVMEVYHPPAVPVTLMQAQTLQDPVHRA 184
T V++V PP V L L++P+H+A
Sbjct: 506 TTVLDVATPPPVSAELQILNQLEEPLHKA 534
>U23511-5|AAC46794.1| 578|Caenorhabditis elegans Hypothetical
protein C32D5.6 protein.
Length = 578
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = -2
Query: 453 RFHHG-YWNYILQCCYQRTW 397
+FHHG YW + YQR W
Sbjct: 332 QFHHGCYWELLFAHGYQRRW 351
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 283 PVHPAVAALMDIAQ-AIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVP 435
P HP + + Q + + PL +P QA PPRP AL+ I+P
Sbjct: 490 PAHPLILLQPSLPQNQLRSQPAHPLILPRLSQQAHPLIPPRPSRRALRLILP 541
>Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical
protein F54B8.12 protein.
Length = 279
Score = 26.6 bits (56), Expect = 10.0
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Frame = -1
Query: 226 FHHDCWNCIHKCCYRPMYWILQGLCLH----QC--YWNCRWMIHFHHDCRN--CIHKCCY 71
F H+ W I P+YWI+ + H QC + C +I DC N C CY
Sbjct: 115 FFHNNWRKI------PLYWIIIPILCHLLFDQCIIFGFCGNVIDVPVDCDNFQCTFNECY 168
Query: 70 RRMYW 56
++ YW
Sbjct: 169 QK-YW 172
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +2
Query: 8 PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAV 187
PP PV ++ T ++P VA +M PP PV + T +DP
Sbjct: 490 PPNPPVVIVDPATSEEPNDTTVAQVM------------PPNPPVVISGPATAKDPSTTTS 537
Query: 188 AALMDTVPTVVM 223
++ T P VV+
Sbjct: 538 DPVVQTNPPVVI 549
>U37429-16|AAA79341.1| 597|Caenorhabditis elegans Protein kinase c
protein 3 protein.
Length = 597
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 103 DCRNCIHKCCYRRM 62
DCR C+HK C+R +
Sbjct: 160 DCRLCVHKKCHRHV 173
>U00066-7|AAY86272.1| 80|Caenorhabditis elegans Hypothetical
protein R12B2.8 protein.
Length = 80
Score = 26.6 bits (56), Expect = 10.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 91 CIHKCCYRRMYWI 53
C ++CCYR YW+
Sbjct: 45 CDNECCYRLRYWV 57
>AF025666-1|AAB88885.1| 597|Caenorhabditis elegans protein kinase
C3 protein.
Length = 597
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 103 DCRNCIHKCCYRRM 62
DCR C+HK C+R +
Sbjct: 160 DCRLCVHKKCHRHV 173
>AF000193-1|AAB52891.1| 715|Caenorhabditis elegans Hypothetical
protein T20B6.2 protein.
Length = 715
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 379 APQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEEL 492
AP K P P+V A+ +VP P VP +V+EL
Sbjct: 564 APAKPDPVPVVVAIDPVVPAP------PEVVPEEVKEL 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,133,178
Number of Sequences: 27780
Number of extensions: 221186
Number of successful extensions: 731
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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