Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0080.Seq
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0272 - 23738514-23738817,23739382-23740748 33 0.16
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 30 1.1
01_01_0613 - 4571689-4572348 29 2.0
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 2.6
06_01_0350 + 2534422-2535615 28 4.5
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 27 6.0
08_02_1562 - 27881885-27881962,27882801-27882887,27883971-278840... 27 7.9
05_02_0028 - 5764980-5766374 27 7.9
03_01_0545 - 4086692-4087591 27 7.9
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 316 GHLRYS-LTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKH 173
G RY+ +TDVPP N P V N IT EF T + +P ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 370 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TA-TSVSATSPL 194
+F P+ P LA + GH R+ + D + S G + N+ R + +VSA + L
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAG-IFNKGDRSYAVRRAAVSAYAAL 424
Query: 193 CTLGTKHRAPADIIDR 146
C + H AP + DR
Sbjct: 425 CAVLCAHEAPGGLPDR 440
>01_01_0613 - 4571689-4572348
Length = 219
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 325 LALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 149
L LGH YSL PP S P V+ ++ ++S SA + +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQ--PVVVAGGNNDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 200 TTLHAWNETPCARRYY 153
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_01_0350 + 2534422-2535615
Length = 397
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 282 PSQTPRLAVSRTGSRGSFKRRRAF-PPRHHSARLERNTVRPPI 157
PS+ L + R S G R RA P SARLER + PP+
Sbjct: 16 PSELLGLVLLRLPSHGDRVRLRAVCRPWRSSARLERKLLPPPL 58
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 27.5 bits (58), Expect = 6.0
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 457 HLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSL--TDVP 284
+L+L LY RA AV + E L Q CP+ ++ LAE+ L +SL + P
Sbjct: 579 NLMLGKLYRISRNNRAAAVCYK-ECLRQ---CPYVFEAITALAEMGLSSKEFSLIFSQAP 634
Query: 283 PQSNSPPG 260
+ PG
Sbjct: 635 NRGGKAPG 642
>08_02_1562 -
27881885-27881962,27882801-27882887,27883971-27884048,
27884100-27884267,27884353-27884465,27885360-27885684
Length = 282
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 229 KTPA*SGSRHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRV 351
+ P + SRHC A + +S + G RP PR+
Sbjct: 31 RPPLVAASRHCTASPFPTTISISSSGLGQARPRDPFLNPRL 71
>05_02_0028 - 5764980-5766374
Length = 464
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -3
Query: 261 AVSRTGSRGSFKRRRAFPPRHHSA---RLERNTV 169
AVS G G + R + PP HHS RL NT+
Sbjct: 15 AVSGGGLSGLYSRASSSPPLHHSGSRRRLRTNTL 48
>03_01_0545 - 4086692-4087591
Length = 299
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 286 PPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP 131
PP + +P S NR R +AT+PL R PA + R LPP
Sbjct: 161 PPTAAAP--SRGNRRGRRRVRHAHAAATAPLMMTSPSPRTPAAAVARWDLPP 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,803
Number of Sequences: 37544
Number of extensions: 322637
Number of successful extensions: 956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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